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billzt / MiFish

This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
https://mitofish.aori.u-tokyo.ac.jp/mifish/
GNU General Public License v3.0
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ValueError: too many values to unpack (expected 2) #14

Closed zhangjl-work closed 2 months ago

zhangjl-work commented 2 months ago

Sample WFPPS13 Step 0: Decompress Sample WFPPS13 Step 1: filter the quality of FASTQ and merge Pair-End Reads Sample WFPPS13 Step 2: filter read length and remove primers Sample WFPPS13 Step 3: De-noise and generate haploid Traceback (most recent call last): File "/usr/local/bin/mifish", line 33, in sys.exit(load_entry_point('mifish', 'console_scripts', 'mifish')()) File "/MiFish/mifish/cmd/mifish.py", line 76, in main pipeline.runMiFish(data_dir=args.seq_dir, data_dir_other_groups=data_dir_other_groups, \ File "/MiFish/mifish/core/pipeline.py", line 215, in runMiFish sizeFasIntegrator.run(zotusCountFile=f'{workdir_sample}/03_haploid/{sample_name}.zotus.size.txt', \ File "/MiFish/mifish/core/sizeFasIntegrator.py", line 9, in run (zotu, count) = line.strip().split() ValueError: too many values to unpack (expected 2)

colorsp When I skip this sample, the program runs normally. My data doesn't seem to have any problems.

billzt commented 2 months ago

File "/MiFish/mifish/core/sizeFasIntegrator.py", line 9, in run

It seems you are running version 1.x. How about upgrading to the latest version?

zhangjl-work commented 2 months ago

File "/MiFish/mifish/core/sizeFasIntegrator.py", line 9, in run

It seems you are running version 1.x. How about upgrading to the latest version?

installed it this way, how do I update it? docker pull taobioinfo/mifish:latest

billzt commented 2 months ago

taobioinfo/mifish:latest has pointed to v2.0 since five weeks ago. I think you can run docker pull taobioinfo/mifish:latest again. And you can see the version via docker image ls

zhangjl-work commented 2 months ago

taobioinfo/mifish:latest has pointed to v2.0 since five weeks ago. I think you can run docker pull taobioinfo/mifish:latest again. And you can see the version via docker image ls

Problem solved. Thank you very much