search

billzt / MiFish

This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
https://mitofish.aori.u-tokyo.ac.jp/mifish/
GNU General Public License v3.0
15 stars 3 forks source link

Example files of multi-fast format: MiFish Pipeline web version #4

Closed jimsingleton closed 1 year ago

jimsingleton commented 1 year ago

Hi,

Could you send me example files of multi-fasta format for MiFish Pipeline web version? http://mitofish.aori.u-tokyo.ac.jp/mifish/ I am interested in species/group name assignments of eDNA sequences (FASTA format). In this web version, I can find two example files of .fastq.gz format, but I cannot find example files of fasta format.

Thank you

billzt commented 1 year ago

s3.fa.xz.zip

@jimsingleton Hi, please try this file. (Because GitHub has limitations on the formats of uploading files, please unzip it to obtain s3.fa.xz and then run with it.)

FASTA format can be the merged results of pair-end reads, or raw sequences of single-end reads.

jimsingleton commented 1 year ago

Dear billzt,

Thank you. Your file (se.fa.xz) worked for MiFish Pipeline web version.