search

billzt / MiFish

This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers
https://mitofish.aori.u-tokyo.ac.jp/mifish/
GNU General Public License v3.0
13 stars 3 forks source link

Advice on viewing JSON data (Relative_Abundance & Diversity) #7

Closed cement-head closed 9 months ago

cement-head commented 9 months ago

What graphical viewers would you recommend to view the JSON output of the CLI pipeline? TIA

billzt commented 9 months ago

Although the web interface uses D3.js to show interactive graphs, for publish-quality figures, I recommend using the R library ggplot2 to plot stacked column charts or heatmaps.

Of course, if you just want to have a quick look, Excel is also OK.