bimberlabinternal / CellMembrane

An R package with wrappers and pipelines for single cell RNA-seq analysis
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Support for alphanumeric groupFields in TCR diversity calculation #262

Closed GWMcElfresh closed 1 month ago

GWMcElfresh commented 1 month ago

Hi everyone,

This is a small change to allow alphanumeric columns to be groupFields for CalculateTCRDiversity(). I think the original point was to eliminate the upper and lower confidence interval columns in the data frame after calculate_Diversity(). This had the side effect of not allowing any alphanumeric field to be used, as they all got filtered by the grep("Z_[0-9]+...).

This now removes all D_ columns and ZUCL and ZLCL columns.

Best regards, GW