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bimberlabinternal
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CellMembrane
An R package with wrappers and pipelines for single cell RNA-seq analysis
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Always join layers after seurat merge
#225
bbimber
closed
7 months ago
0
add msigdb gene set parsing to RunEscape
#224
GWMcElfresh
closed
7 months ago
4
Ensure underscore replaced with hyphen in PseudobulkSeurat
#223
bbimber
closed
8 months ago
0
Drop assay of stored ranks prior to merge
#222
bbimber
closed
8 months ago
0
Support escape and CS-CORE
#221
bbimber
closed
8 months ago
0
Improve the UCell-based Cell Cycle function
#220
bbimber
closed
8 months ago
0
Use release-specific install_bioc_sysdeps.sh
#219
bbimber
closed
8 months ago
0
Add flag in CalculateUcellPerFeature to ignore existing cached ranks
#218
bbimber
closed
8 months ago
0
Avoid warning in AppendCiteSeq
#217
bbimber
closed
8 months ago
0
Update test to ensure scMetabolism is not in an assay
#216
bbimber
closed
8 months ago
0
Add "niche" detection to spatial analyses
#215
GWMcElfresh
closed
8 months ago
0
Instantiated the Gene Set Analysis/Pathway Enrichment
#214
maanasa-kaza
opened
9 months ago
0
Begin to support hdWGCNA
#213
bbimber
opened
9 months ago
0
Add names to geneIds vectors prior to adding
#212
bbimber
closed
9 months ago
0
splitSeuratObject added
#211
eisascience
opened
9 months ago
0
Rework CLR norm when a feature list is provided
#210
bbimber
closed
9 months ago
0
Add new smaller G2M gene set
#209
bbimber
closed
9 months ago
0
Support scMetabolism
#208
bbimber
closed
9 months ago
0
Support scTour
#207
bbimber
closed
9 months ago
0
Add the collapse argument for merging
#206
bbimber
closed
9 months ago
0
Update actions/checkout and actions/cache versions
#205
bbimber
closed
9 months ago
0
Instead of relying on assay class, test possible variance field names
#204
bbimber
closed
9 months ago
0
Update README.md
#203
bbimber
closed
9 months ago
0
Prepare for seurat 5
#202
bbimber
closed
9 months ago
0
add nCount_RNA outlier detection to Pseudobulking
#201
GWMcElfresh
closed
10 months ago
2
Add new LogNormalizeUsingAlternateAssay method
#200
bbimber
closed
10 months ago
0
fix asterisks in gene names
#199
GWMcElfresh
closed
10 months ago
2
sctour
#198
gboggy2
closed
9 months ago
4
Fix error detecting celldex references
#197
bbimber
closed
11 months ago
0
Fix issue detecting celldex methods
#196
bbimber
closed
11 months ago
0
Initialize celldex
#195
bbimber
closed
11 months ago
0
Fix to ClrNormalizeBhyGroup when data has NAs
#194
bbimber
closed
11 months ago
0
FitRegularizedClassificationGlm for finding Gene Sets
#193
GWMcElfresh
closed
11 months ago
6
Add BFC_CACHE to docker environment for SingleR
#192
bbimber
closed
11 months ago
0
Preemptively remove special characters in pseudobulk
#191
bbimber
closed
11 months ago
0
Add more validation to pseudobulking metadata
#190
bbimber
closed
11 months ago
0
Attempt to fix cite-seq / Idents must be factor error
#189
bbimber
closed
11 months ago
0
Reorder installs
#188
bbimber
closed
11 months ago
0
Update to SeuratObject 5
#187
bbimber
closed
12 months ago
0
Limit to seurat 4.4.0
#186
bbimber
closed
1 year ago
0
Not an issue, but an invitation for information exchange
#185
derrik-gratz
closed
1 year ago
2
Drop leiden scanpy branch
#184
bbimber
closed
1 year ago
0
print out number of cells in adata
#183
gboggy2
closed
1 year ago
0
create function to append clone properties to a Seurat object
#182
gboggy2
closed
9 months ago
1
generate code for generating diversity profiles
#181
gboggy2
closed
5 months ago
2
Update CoNGA allowable species
#180
bbimber
closed
1 year ago
0
add "AddNewMetaColumn" function
#179
gboggy2
closed
1 year ago
5
Add argument to choose CoGNA svg to png tool
#178
bbimber
closed
1 year ago
0
subset TCRs to barcodes in seurat object
#177
gboggy2
closed
1 year ago
1
Fix conga docker install
#176
bbimber
closed
1 year ago
0
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