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bingmann / cobs

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
https://panthema.net/cobs
MIT License
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Provide the number of k-mers in the query #13

Open graceblackwell opened 4 years ago

graceblackwell commented 4 years ago

Could the number of k-mers in the query be included in the output so the user can calculate the percentage of the query in each dataset (or provide the percentage as well)?

bingmann commented 4 years ago

Maybe we should define a better output format.

graceblackwell commented 4 years ago

Yeah could be useful! Would be nice to have it write to a file as well. Could do something like bigsi? Though have the query header instead of the query sequence

iqbal-lab commented 4 years ago

Output format an excellent idea.