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bingogome / samm

A 3D Slicer integration to Meta's SAM.
https://arxiv.org/abs/2304.05622
MIT License
241 stars 34 forks source link

Slicer crashes upon clicking start mask sync #33

Closed BenyAlbatross closed 1 year ago

BenyAlbatross commented 1 year ago

My input is a nifti file. After clicking compute embedding, the terminal outputs "All images have been processed", indicating that embedding has been successfully computed. I can see that the .pkl files have been produced. When I click on the prompts tab and click on start mask sync, slicer closes. There is no error message in the terminal. Slicer only crashes when start mask sync is clicked after embeddings have been computed.

bingogome commented 1 year ago

Could you please share the environment information?

vankhoa21991 commented 1 year ago

Hello, I have the same issue, I'm using ubuntu 20.4, with slicer 5.2.2. It crashes when I turn on sync mask.

BenyAlbatross commented 1 year ago

Hi, apologies for the late reply. I'm using Ubuntu 22.04 with slicer 5.2.2

bingogome commented 1 year ago

This issue should be fixed now in https://github.com/bingogome/samm/commit/5b63c7dfa120c39066215fb766f8b246be3e2414 by switching communication from memory mapping to ZMQ.