assemble_tag_contigs discarding some usable tags

[GoogleCodeExporter]

What steps will reproduce the problem?
1. read_bed -i chr4.bed | assemble_tag_contigs
2. inspect the SCORE (number of mapped loci) and clone count for a given tag
3.

What is the expected output? What do you see instead?
Any tags with a clone count that is equal to or greater than the SCORE is
expected to contribute to a tag-contig. However, they were discarded.

What version of the product are you using? On what operating system?

Please provide any additional information below.
The attached file may have fixed that problem

Original issue reported on code.google.com by jung.cho...@gmail.com on 18 Sep 2009 at 2:34

Attachments:

• bed2tag_contigs.c

[GoogleCodeExporter]

To Martin,
In the attached file, I just modified the if-clause at the line 104.
from:
  if ( score > entry->score && entry->score > 0) {
to:
  if ( score >= entry->score && entry->score > 0) {

Original comment by jung.cho...@gmail.com on 18 Sep 2009 at 2:44

[GoogleCodeExporter]

This issue was closed by revision r671.

Original comment by martinah...@gmail.com on 18 Sep 2009 at 6:12

• Changed state: Fixed

[GoogleCodeExporter]

Rigth Cholhee, you probably are right as usual, so I made the change.

Now, one does only need to go to biopieces/code_c/Maasha/src and run make.

Original comment by martinah...@gmail.com on 18 Sep 2009 at 6:15