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binli123 / dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
MIT License
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TCGA -How to reproduce the same number of patches of the publication? #58

Open Bontempogianpaolo1 opened 1 year ago

Bontempogianpaolo1 commented 1 year ago

Hello @binli123 ,

I'm trying to tile the TCGA dataset with the command :

python deepzoom_tiler.py -m 0 2 -b 20

But the number of patches at 20x is much higher ( almost 20K / bag)). Which is the exact command to reproduce your work?

binli123 commented 1 year ago

You can use a higher threshold. In the original experiment, a different metric was used to threshold the patches.