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bio-guoda / preston

a biodiversity dataset tracker
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preston cat does not resolve content when anchored to specific provenance log hash #252

Closed jhpoelen closed 1 year ago

jhpoelen commented 1 year ago 
preston cat\
 --remote https://zenodo.org/record/8124478/files\
 https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv\
 | head -n2

produces:

< 1 mm organic debric,organic material,functional name,provided by Brian Hayden
< 1 mm organic debris,organic material,functional name,provided by Brian Hayden

however 

preston cat\
 --remote https://zenodo.org/record/8124478/files\
 --anchor hash://sha256/0e9bc57bc082b58a2c7a509bb73362b258ec8ddfc6664898e25c639786413fda\
 https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv\
 | head -n2

produces:

[main] WARN bio.guoda.preston.cmd.ReplayUtil - No provenance found. Please use/create a Preston data archive.
java.io.IOException: problem retrieving [https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv]
    at bio.guoda.preston.cmd.ContentQueryUtil.getContent(ContentQueryUtil.java:58)
    at bio.guoda.preston.cmd.ContentQueryUtil.copyContent(ContentQueryUtil.java:32)

expected that aliases be resolved within the scope of defined provenance anchor.

jhpoelen commented 1 year ago

After provided fixes, the following results are obtained:

$ preston cat --remote https://zenodo.org/record/8125362/files https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv | head -n2
< 1 mm organic debric,organic material,functional name,provided by Brian Hayden
< 1 mm organic debris,organic material,functional name,provided by Brian Hayden

as well as

 preston cat --remote https://zenodo.org/record/8125362/files --anchor hash://sha256/0e9bc57bc082b58a2c7a509bb73362b258ec8ddfc6664898e25c639786413fda https://github.com/globalbioticinteractions/globi-taxon-names/raw/main/taxon-name-mapping.csv | head -n2
< 1 mm organic debric,organic material,functional name,provided by Brian Hayden
< 1 mm organic debris,organic material,functional name,provided by Brian Hayden