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bio-learn / biolearn

Machine learning tools for biomarker analysis
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Design enhancement for data loading and running clocks #25

Open sarudak opened 1 year ago

sarudak commented 1 year ago

We would like to improve the usability and discoverability of data sources and clocks in the biolearn library. The new design is being drafted in this document: https://docs.google.com/document/d/17Ahfl_VErTX_ySjhOpepeioAhQr4xptfFZ2xCxegoII/edit?usp=sharing

juliev42 commented 11 months ago

++ to this issue, I really like the ease of loading GEO methylation datasets in biolearn but it's not super intuitive to load from just the GEO # in it's current form (e.g. geo.get("GSE41169")). Documentation of the metadata available for each dataset would be super useful.