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bio-ontology-research-group / deepgo

Function prediction using a deep ontology-aware classifier
http://deepgo.bio2vec.net
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Protein vectors in protein-interaction-network #24

Open datduong opened 4 years ago

datduong commented 4 years ago

The paper cites the protein vectors in Alshahrani,M. et al. (2017). Did you use exactly the same vectors by Alshahrani,M. et al. (2017)? In this paper Alshahrani,M. et al. (2017), there 6 other databases which were used to encode proteins into vectors. So just to confirm, are the protein vectors contain only data from interaction-network, or from other additional sources? Thanks.

coolmaksat commented 4 years ago

No, we have built a new graph from PPI and orthology links from EGGNOG

datduong commented 4 years ago

Awesome. Thanks. One last question, is the method applied to your own PPI data exactly the same as Alshahrani,M. et al. (2017)?