How to use deepgo2 to predict functions from multifasta file without GPU

bio-ontology-research-group / deepgo2

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How to use deepgo2 to predict functions from multifasta file without GPU #2

Open Rohit-Satyam opened 7 months ago

Rohit-Satyam commented 7 months ago

Hi @leechuck @coolmaksat @ferzcam

I was checking out the deepgo2 paper and wanted to know if there is a way to run predictions on our custom protein multifasta file using deepgo2 without GPU.

coolmaksat commented 7 months ago

Hi, Sorry for the late reply, it runs on cpu, there is a parameter (--device/-d) in predict.py script. However, it might take a long time to get the ESM2 embeddings.