bio-ontology-research-group deepgoplus issues

bio-ontology-research-group / deepgoplus

DeepGO with GOPlus axioms

BSD 3-Clause "New" or "Revised" License

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issues

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DeepGOPlus output

#65 queirozhanna opened 2 weeks ago
0
update.py fails to update the deepgoplus database

#64 remkv6 opened 3 weeks ago
0
Can't install DeepGOPlus dependencies

#63 queirozhanna opened 2 months ago
1
Evaluate the predictions.pkl provided on CAFA3 with CAFA_assessment_tool

#62 song2000012138 closed 11 months ago
0
diamond - annotations

#61 vahidodin opened 11 months ago
0
revise for init

#60 altriasjy31 closed 12 months ago
0
question

#59 JNU-luyi opened 1 year ago
0
Is there a download link for the dataset used in Table 3

#58 song2000012138 opened 1 year ago
17
How can I evaluate deepgoplus with cafa3 data?

#57 song2000012138 closed 1 year ago
4
Train model

#56 vahidodin closed 11 months ago
3
Maybe 'pip install deepgoplus' needs a dependency update

#55 z4668640 closed 6 months ago
3
GO results

#54 wjq1981 opened 1 year ago
2
Bump requests from 2.24.0 to 2.31.0

#53 dependabot[bot] opened 1 year ago
0
Some confusion about the web and local versions.

#52 z4668640 closed 1 year ago
2
How to read (data deepgo/'+ont+'. pk) files

#51 Da-tweekaz opened 1 year ago
3
Obtaining Probabilities Across all GO Terms

#50 e-trop opened 1 year ago
0
Bump tensorflow-gpu from 2.3.1 to 2.12.0

#49 dependabot[bot] opened 1 year ago
0
Bump tensorflow-gpu from 2.3.1 to 2.9.3

#48 dependabot[bot] closed 1 year ago
1
Evaluate the predictions.pkl provided on CAFA3 with CAFA_assessment_tool

#47 Worldseer opened 1 year ago
14
predict.py - gzip fails to open ASCII file

#46 hdetering opened 2 years ago
3
predict.py CLI uses option -tf twice

#45 hdetering opened 2 years ago
0
Bump tensorflow-gpu from 2.3.1 to 2.7.2

#44 dependabot[bot] closed 1 year ago
1
Bump tensorflow-gpu from 2.3.1 to 2.6.4

#43 dependabot[bot] closed 2 years ago
1
Bump tensorflow-gpu from 2.3.1 to 2.5.3

#42 dependabot[bot] closed 2 years ago
1
Alpha value potential fix

#41 InesGP closed 6 months ago
1
DeepGOPlus code vs DeepGOWeb server inconsistencies

#40 InesGP closed 6 months ago
5
Bump tensorflow-gpu from 2.3.1 to 2.5.1

#39 dependabot[bot] closed 2 years ago
1
go.obo uploaded on 01-Dec-2019

#38 nicolasfredesfranco opened 3 years ago
1
Where the train_data.pkl and test_data.pkl uploaded on 02-Dec-2019 came from?

#37 nicolasfredesfranco opened 3 years ago
11
categorising the result

#36 dikshyantg opened 3 years ago
3
Develop

#35 ferzcam closed 3 years ago
0
Bump tensorflow-gpu from 2.3.1 to 2.4.0

#34 dependabot[bot] closed 3 years ago
1
Running Example, pandas/pickle issues

#33 CFGrote opened 3 years ago
2
diamond version Error

#32 coderwzz10 opened 3 years ago
2
deamond program Error

#31 coderwzz10 closed 3 years ago
0
Download link

#30 coderwzz10 closed 3 years ago
4
Error: no such option: --data-root

#29 aram10 closed 3 years ago
8
Bump tensorflow-gpu from 1.12.0 to 2.3.1

#28 dependabot[bot] closed 3 years ago
1
Bump tensorflow-gpu from 1.12.0 to 1.15.4

#27 dependabot[bot] closed 3 years ago
1
Error: 'Pandas' object has no attribute 'exp_annotation"

#26 msing21 closed 3 years ago
8
pr

#25 coolmaksat closed 4 years ago
0
Issue with evaluation when there are no true go class

#24 samehkamaleldin closed 4 years ago
2
Clarification on how the function `calculate_ic` works

#23 samehkamaleldin closed 4 years ago
2
ValueError: Length of values does not match length of index

#22 Mohamed-ElhajAbdou closed 3 years ago
3
AttributeError: 'Pandas' object has no attribute 'preds'

#21 Mohamed-ElhajAbdou closed 3 years ago
2
dimond program

#20 Mohamed-ElhajAbdou closed 3 years ago
3
TypeError: 'DFGenerator' object is not subscriptable #17

#19 Mohamed-ElhajAbdou closed 4 years ago
3
TypeError: list indices must be integers or slices, not str

#18 Mohamed-ElhajAbdou closed 3 years ago
1
TypeError: 'DFGenerator' object is not subscriptable

#17 Mohamed-ElhajAbdou closed 4 years ago
2
Bump tensorflow-gpu from 1.12.0 to 1.15.2

#16 dependabot[bot] closed 4 years ago
1