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bio-tools / biotoolsSchema

biotoolsSchema : Tool description data model for computational tools in life sciences
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Add mappings to DOAP & other main vocabularies #21

Open matuskalas opened 8 years ago

matuskalas commented 8 years ago

It'll allow integrating valuable descriptions such as https://github.com/common-workflow-language/workflows/blob/master/tools/GATK-PrintReads.cwl with Bio.Tools & co

joncison commented 8 years ago

+1

incl. FOAF

I actually did this once (a long time ago) but can't find the g-doc :( Anyway, easy enough to redo, with latest schema and whatever vocabs are flavour of the month

joncison commented 8 years ago

Candidates: dublin core foaf doap IAO SIO what else ??

matuskalas commented 8 years ago

Let's harvest namespaces used in https://github.com/common-workflow-language/workflows to start with

joncison commented 7 years ago

Alban Gaignard may look at alignment of biotoolsXSD with Linked Open Vocabularies or any other existing ontologies (see https://biotools.sifterapp.com/issues/50)

matuskalas commented 6 years ago

👍 @albangaignard

joncison commented 6 years ago

It would be very nice if this mapping can make it into biotoolsSchema 3.0.0

albangaignard commented 6 years ago

Hi all, I just pushed some code to crawl biotools and produce and RDF data dump:

https://github.com/bio-tools/biotoolsShim/tree/master/json2rdf (python code) https://github.com/albangaignard/biotoolsRdf (data and queries)

joncison commented 5 years ago

UPDATE We have the mapping spreadsheet which is (mostly) captured in the proposed model for biotoolsRDF.

I leave this open for now, so we can formally annotate the mappings directly in biotoolsSchema (once we've once-and-for-all agreed them). It should also include mapping to schema.org & CodeMeta, see https://github.com/bio-tools/biotoolsSchema/issues/113 and https://github.com/bio-tools/biotoolsSchema/issues/111