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bio2rdf / bio2rdf-scripts

Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets
http://bio2rdf.org/
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Inquiry about using bio2rdf to parse drugbank #480

Closed yq-leo closed 2 years ago

yq-leo commented 2 years ago

Hi, I'm currently trying to parse drugbank and convert it to RDF using bio2rdf. I followed the developers' guide in the Wiki to set up the environment and ran runparser.php but it gave me an error: 'Fatal error: Uncaught ArgumentCountError: Too few arguments to function error_handler(), 4 passed and exactly 5 expected.' Also, I have drugbank_all_full_database.xml.zip stored in data/download and ran drugbank.php, but the program returned immediately without doing anything. I wonder what's wrong.

micheldumontier commented 2 years ago

Hi, sorry this project is no longer active.