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bio4j / bio4j-titan

Titan-specific bio4j implementation
https://github.com/bio4j/bio4j
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test the new UniProt import process #57

Closed eparejatobes closed 9 years ago

eparejatobes commented 9 years ago

I want to close my browser tabs, and all this might be relevant here

laughedelic commented 9 years ago

In the last one with benchmarks, DEX/Sparksee looks as an appealing option..

eparejatobes commented 9 years ago

not OSS if I remember well

laughedelic commented 9 years ago

oh.. I didn't even know about this thing ") is it really important? does OrientDB have it?

eparejatobes commented 9 years ago

OSS = Open Source Software

laughedelic commented 9 years ago

:laughing: first link in google "OSS DB" — some certificate thing...

pablopareja commented 9 years ago

Things finally seem to be working fine now!

I had to change the way we import UniProt KB so that TrEMBL does not take forever and now we import it in little chunks, (currently I'm using ~ 200 chunks with each of them having a size of 500.000 entries)

Around ~ 16.000.000 entries' vertices have already been imported after a few hours so if nothing weird happens it should be finished by tomorrow night. I'll keep you posted! :wink:

marina-manrique commented 9 years ago

Cool!!! :clap: :tada: As I promised you all @bio4j/bio-people will get a super :cake: :)

pablopareja commented 9 years ago

Still, these are just the vertices which are being imported. I should then import the edges and later on all the combined modules. Anyways it's good news indeed! :smiley:

laughedelic commented 9 years ago

:cake: only for bio-people.... :cry:

marina-manrique commented 9 years ago

Sorry I got confused with the teams :cake: for @bio4j/members :)

laughedelic commented 9 years ago

:blush: now I'm happy for those lucky people in Granada...