bio4j / blueprints

Bio4j default Blueprints model implementation
https://github.com/bio4j/bio4j
GNU Affero General Public License v3.0
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Multiple taxon names #3

Closed laughedelic closed 9 years ago

laughedelic commented 10 years ago

So I suggest to make this property multi-valued and write there all fine names that we get from names.dmp

pablopareja commented 10 years ago

I don't know... I don't think it'd make much sense to group all names from different sources such as BLAST, GenBank and so on. Besides, I don't think they would be useful since the only sort of standard that exist is that of the NCBI _(scientificname in this file) Let's see what @rtobes thinks... :wink:

laughedelic commented 10 years ago

Well, even if those other names are not so usefull, we should leave one property: name or scientificName, because we have only one value.

pablopareja commented 10 years ago

OK but in any case let's wait and see what @rtobes says about it, she knows better than any of us whether any of those names are useful or on the contrary we should run away from them! :smile:

laughedelic commented 10 years ago

any update here? @pablopareja @rtobes

rtobes commented 10 years ago

It is true that the most important name is the scientific name but after doing many different project I think that it is better to store all the names with their type. You never knows the type of name that you will need for future projects. @marina-manrique what is your opinion?

marina-manrique commented 10 years ago

I agree with @rtobes on storing all the names but I don't know how would be the better way to implement that: multivalues or different node attributes... for that you guys ( @pablopareja @eparejatobes @laughedelic ) know much more

pablopareja commented 10 years ago

Once we know that they are interested I think that names should be stored as different properties.according to their source, that's to say, we would have properties such as:

(I got these after having a quick look at the values included in the files) By the way, as far as I see there might be repetitions in all these categories always talking about the same taxonomic unit :wink:

laughedelic commented 10 years ago

up :point_up: let's decide something here for the upcoming release. I think, it's a small change, but it improves usability.

pablopareja commented 10 years ago

mmm It's extra work too... I think there're more important things to invest that time on but if you want to do it yourself that'd be nice! :stuck_out_tongue_winking_eye:

laughedelic commented 10 years ago

whatever, it's no work. I'm saying that we should first decide something here.