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bioFAM / MOFA

Multi-Omics Factor Analysis
GNU Lesser General Public License v3.0
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MOFAtools.rdb corrupt #11

Closed whitleyo closed 6 years ago

whitleyo commented 6 years ago

Hi,

When I try to access the documentation for a function in MOFA, I get an error message saying MOFAtools.rdb is corrupt.

Command in R console in RStudio

?calculateVarianceExplained

Error Message: Error in fetch(key) : lazy-load database '/home/whitleyo/R/x86_64-pc-linux-gnu-library/3.4/MOFAtools/help/MOFAtools.rdb' is corrupt

I tried removing the R package and re-installing

Remove package: require(ultils) remove.packages('MOFAtools')

install package again (via R terminal): devtools::install_github("PMBio/MOFA", subdir="MOFAtools")

I still have same problem after doing this.

Any ideas as to what can be going on?

rargelaguet commented 6 years ago

I have never seen this problem... can you remove the .rdb file manually and try to look at the documentation again? Is what this StackOverflow thread suggests: https://stackoverflow.com/questions/30424608/error-in-fetchkey-lazy-load-database

Alternatively, you could try and open MOFAtools.Rproj with Rstudio and compile documentation manually, it should be more explicit about the errors..

whitleyo commented 6 years ago

Well, what do you know, restarting the R session got rid of the problem. Sorry about that!

rargelaguet commented 6 years ago

the beauty and reproducibility of R :)