Trouble Installing MOFA in R

AmyLei96 commented 5 years ago

Hello,

I am receiving the following errors when installing MOFA (MOFAdata was fine):

Warning: no function found corresponding to methods exports from ‘GenomicRanges’ for: ‘concatenateObjects’ Warning: replacing previous import ‘BiocGenerics::dims’ by ‘Biobase::dims’ when loading ‘SummarizedExperiment’ Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) : namespace ‘rhdf5’ 2.24.0 is being loaded, but >= 2.27.11 is required ERROR: lazy loading failed for package ‘MOFA’

removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/MOFA’ Error in i.p(...) : (converted from warning) installation of package ‘/var/folders/8p/q0ycmsjn24z_lhggnht49nmm0000gn/T//RtmpdUtTas/file86229c13e3f/MOFA_0.99.5.tar.gz’ had non-zero exit status

rargelaguet commented 5 years ago

It is an error due to outdated dependencies. From the error message I would bet that you need to update the rhdf5 package: namespace ‘rhdf5’ 2.24.0 is being loaded, but >= 2.27.11 is required

rargelaguet commented 5 years ago

I have updated the rhdf5 version requirements, now it should work. Can you try again?

AmyLei96 commented 5 years ago

I had updated the rhdf5 package before and it still didn't work, but after your updating the version requirements, it works. Thank you!

rargelaguet commented 5 years ago

Great, I think there has been a mistake on the last commit which I now reversed. Apologies!

bioFAM / MOFA

Trouble Installing MOFA in R #29