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bioFAM / MOFA

Multi-Omics Factor Analysis
GNU Lesser General Public License v3.0
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No gene is appearing in plot_enrichment_detailed #69

Open priyatamapandey opened 3 months ago

priyatamapandey commented 3 months ago

Hi, I am doing enrichment analysis for RNAseq and Protein datasets. It is not printing gene names in plot_enrichment_details. There are some dots appearing in black and many in gray but no names for black dots. I used MSigDB_v6.0_C5_mouse feature set. 

enrichment.parametric.RNA <- run_enrichment(model,
  view = "RNA", factors = 1:7,
  feature.sets = MSigDB_v6.0_C5_mouse,
  sign = "positive",
  statistical.test = "parametric"
)
Screenshot 2024-07-11 at 11 13 58 PM

Please suggest why? How can I download the enriched genes for sig pathways so that I can check manually?

Thank you, Priya