Bioconductor 3.16's MOFA2 refers to no-longer-existing function basilisk.utils::installMiniconda - Githubissues

bioFAM / MOFA2

Multi-Omics Factor Analysis

https://biofam.github.io/MOFA2/

GNU Lesser General Public License v3.0

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Bioconductor 3.16's MOFA2 refers to no-longer-existing function basilisk.utils::installMiniconda #111

Open github-rena opened 1 year ago

github-rena commented 1 year ago

Bioconductor 3.16's version of MOFA2 (1.8.0) has a residual reference to basilisk.utils::installMiniconda

configure:${R_HOME}/bin/Rscript -e "if (basilisk.utils::useSystemDir()) basilisk.utils::installMiniconda(installed=FALSE)"

This function no longer exists. Aaron Lun has recommended that the following be used instead https://bioconductor.org/packages/devel/bioc/vignettes/basilisk/inst/doc/motivation.html#populating-environments-on-installation