search

biobakery / biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
Other
97 stars 33 forks source link

error:biobakery_workflows_databases --install 16s_usearch #10

Open LiZhihua1982 opened 3 years ago

LiZhihua1982 commented 3 years ago

(biobakery_workflows) lizhihua@lizhihua-S2600CP:~$ biobakery_workflows --versionbiobakery_workflows v3.0.0-alpha.4 (biobakery_workflows) lizhihua@lizhihua-S2600CP:~$ kneaddata --version kneaddata v0.7.4 (biobakery_workflows) lizhihua@lizhihua-S2600CP:~$ biobakery_workflows_databases --install 16s_usearch Downloading green genes database files Downloading ftp://greengenes.microbio.me/greengenes_release/gg_13_8_otus/rep_set/97_otus.fasta Downloading file of size: 136.58 MB

136.59 MB 100.00 % 3.75 MB/sec 0 min -0 sec

Downloading ftp://greengenes.microbio.me/greengenes_release/gg_13_8_otus/taxonomy/97_otu_taxonomy.txt Downloading file of size: 9.61 MB

9.61 MB 100.01 % 1.20 MB/sec 0 min -0 sec

Traceback (most recent call last): File "/home/lizhihua/miniconda3/envs/biobakery_workflows/bin/biobakery_workflows_databases", line 11, in sys.exit(main()) File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 244, in main run_command(["download_picrust_files.py"]) File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 73, in run_command id=subprocess.check_call(command, shell=shell) File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 358, in check_call retcode = call(*popenargs, *kwargs) File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 339, in call with Popen(popenargs, **kwargs) as p: File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 800, in init restore_signals, start_new_session) File "/home/lizhihua/miniconda3/envs/biobakery_workflows/lib/python3.7/subprocess.py", line 1551, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'download_picrust_files.py': 'download_picrust_files.py'