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biobakery / biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
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Problem with databases install #23

Closed mpozuelo closed 2 years ago

mpozuelo commented 2 years ago

Hi you all, we have installed in a cluster with Conda, biobakery_workflows together with all the dependencies it needs for whole genome sequencing, MetaPhlAn, kneaddata, humann, but I am getting this error when running biobakery_workflows_databases --install wmgx ERROR: Unable to find tool required for database install: strainphlan.py. Please install StrainPhlAn.

StrainPhlan is installed and the file is also present. We are working in a Conda environment, could it be a problem related to this?

Many thanks for your help.

github-actions[bot] commented 2 years ago

Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.