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biobakery / biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
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error installing databases "no module named 'leveldb'" #24

Closed emi-panzetta closed 2 years ago

emi-panzetta commented 2 years ago

Hi, I hope you can help me with this, I installed the workflow with conda and when I try to install the databases I keep getting this error. Thanks!!

$ biobakery_workflows_databases --install wmgx Traceback (most recent call last): File "/hpc/group/mp345/miniconda3/envs/shotgun/bin/biobakery_workflows_databases", line 6, in from biobakery_workflows.biobakery_workflows_databases import main File "/hpc/group/mp345/miniconda3/envs/shotgun/lib/python3.9/site-packages/biobakery_workflows/biobakery_workflows_databases.py", line 30, in from . import utilities File "/hpc/group/mp345/miniconda3/envs/shotgun/lib/python3.9/site-packages/biobakery_workflows/utilities.py", line 34, in from anadama2.tracked import TrackedDirectory File "/hpc/group/mp345/miniconda3/envs/shotgun/lib/python3.9/site-packages/anadama2/init.py", line 83, in from .workflow import Workflow File "/hpc/group/mp345/miniconda3/envs/shotgun/lib/python3.9/site-packages/anadama2/workflow.py", line 24, in from . import backends File "/hpc/group/mp345/miniconda3/envs/shotgun/lib/python3.9/site-packages/anadama2/backends.py", line 7, in import leveldb ModuleNotFoundError: No module named 'leveldb'

github-actions[bot] commented 2 years ago

Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.