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biobakery / biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
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nanopore reads? #28

Closed mawa86 closed 2 years ago

mawa86 commented 2 years ago

Hi Just to confirm, none of these tools is appropriate for amplicon sequencing (e.g. whole 16S sequencing on Oxford Nanopore platforms)? Wherever I look I only find mentions to "shotgun"..

Thanks in advance for any reply Martin

github-actions[bot] commented 2 years ago

Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.