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biobakery / biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
http://huttenhower.sph.harvard.edu/biobakery_workflows
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Error installing #34

Closed imonteroo closed 8 months ago

imonteroo commented 8 months ago

I'm installing biobakery workflows in a conda environment

I started well

conda create --name biobakery conda activate biobakery conda install -c biobakery biobakery_workflows conda install -c biobakery leveldb

but when I tryed to install databases, errors appeared.

biobakery_workflows_databases --install wmgx --location /media/microviable/e/bwfdb/ Installing humann utility mapping database Download URL: http://huttenhower.sph.harvard.edu/humann_data/full_mapping_v201901b.tar.gz CRITICAL ERROR: Unable to download and extract from URL: http://huttenhower.sph.harvard.edu/humann_data/full_mapping_v201901b.tar.gz WARNING: Unable to install database. Error running command: humann_databases --download utility_mapping full /media/microviable/e/bwfdb/humann Unable to find strainphlan install.

Any idea?

Thankyou

github-actions[bot] commented 8 months ago

Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.