bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
root@ce16e5f0ff77:/# biobakery_workflows_databases --install isolate_assembly
Downloading eggnog mapper databases
Traceback (most recent call last):
File "/usr/local/bin/biobakery_workflows_databases", line 11, in
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/biobakery_workflows/biobakery_workflows_databases.py", line 238, in main
run_command(["download_eggnog_data.py","--data_dir",eggnog_install_path,"-y"])
File "/usr/local/lib/python3.6/dist-packages/biobakery_workflows/biobakery_workflows_databases.py", line 73, in run_command
id=subprocess.check_call(command, shell=shell)
File "/usr/lib/python3.6/subprocess.py", line 306, in check_call
retcode = call(*popenargs, *kwargs)
File "/usr/lib/python3.6/subprocess.py", line 287, in call
with Popen(popenargs, **kwargs) as p:
File "/usr/lib/python3.6/subprocess.py", line 729, in init
restore_signals, start_new_session)
File "/usr/lib/python3.6/subprocess.py", line 1364, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'download_eggnog_data.py': 'download_eggnog_data.py'
root@ce16e5f0ff77:/# biobakery_workflows_databases --install isolate_assembly Downloading eggnog mapper databases Traceback (most recent call last): File "/usr/local/bin/biobakery_workflows_databases", line 11, in
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/biobakery_workflows/biobakery_workflows_databases.py", line 238, in main
run_command(["download_eggnog_data.py","--data_dir",eggnog_install_path,"-y"])
File "/usr/local/lib/python3.6/dist-packages/biobakery_workflows/biobakery_workflows_databases.py", line 73, in run_command
id=subprocess.check_call(command, shell=shell)
File "/usr/lib/python3.6/subprocess.py", line 306, in check_call
retcode = call(*popenargs, *kwargs)
File "/usr/lib/python3.6/subprocess.py", line 287, in call
with Popen(popenargs, **kwargs) as p:
File "/usr/lib/python3.6/subprocess.py", line 729, in init
restore_signals, start_new_session)
File "/usr/lib/python3.6/subprocess.py", line 1364, in _execute_child
raise child_exception_type(errno_num, err_msg, err_filename)
FileNotFoundError: [Errno 2] No such file or directory: 'download_eggnog_data.py': 'download_eggnog_data.py'