humann_genefamilies_genus_level: Fix a dictionary parsing and add functional test

biobakery / humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

http://huttenhower.sph.harvard.edu/humann

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humann_genefamilies_genus_level: Fix a dictionary parsing and add functional test #26

Open bebatut opened 3 years ago

bebatut commented 3 years ago

Hi,

I was testing humann_genefamilies_genus_level command within a Python3 environment and I got an error because of iteritems removed in Python3. I also added a functional test for this command.

I hope the changes will fit.

Bérénice