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biobakery / humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
http://huttenhower.sph.harvard.edu/humann
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Confusing Demo Instructions #27

Closed DarioS closed 3 years ago

DarioS commented 3 years ago

If installing from pip, please also download the source as it contains the demo examples.

But, it is already present on disk when installing using pip, so why download it again?

$ find software/* -name demo.fastq
software/Python3/lib/python3.7/site-packages/humann/tests/data/demo.fastq

Clicking the Code button and Download Zip downloads a 619 MB file which isn't clear ahead of time. It might also be convenient to read that --install-option=--bypass-dependencies-install is mutually exclusive with a Demo Run.

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