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biobakery / humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
http://huttenhower.sph.harvard.edu/humann
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Check t__ only on rows with taxonomy #43

Open fasnicar opened 2 years ago

fasnicar commented 2 years ago

So, this is causing HUMAnN to run without prescreening even when passing a MetaPhlAn taxonomic profile just because in the second line of the MetaPhlAn profile that starts with # and where the command line is reported, by chance, there could be a t__. Actually, the code from line 89 to line 92 could be removed, as MetaPhlAn 3 will never have t__ in the output profile.