search

biobakery / humann

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).
http://huttenhower.sph.harvard.edu/humann
Other
170 stars 58 forks source link

HUMAnN3.5 error with MetaPhlAn4 #44

Closed Axolotl233 closed 2 years ago

Axolotl233 commented 2 years ago

Hi community,

I run HUMAnN3.5 with MetaPhlAn4 in linux but get a error, here is error message in screen: ERROR: The MetaPhlAn taxonomic profile provided was not generated with the expected database version. Please update your version of MetaPhlAn to at least v3.0 These two software were installed by conda, an HUMAnN version is v3.5, MetaPhlAn version is 4.0.1 (24 Aug 2022), the database were download and config using humann_database and metaphlan --install. my command line was pasted below: humann -i merge.fq -o sample --threads 30 --search-mode uniref90 --memory-use maximum --metaphlan-options “-t rel_ab_w_read_stats” --pathways unipathway

please tell me what’s wrong, I can’t fix it by myself.

PS. I have run humann_test and all thing is ok. I also have run MetaPhlAn4 separately, and it correctly worked.

Thanks, Nemo

github-actions[bot] commented 2 years ago

Thank you for creating this issue. We currently field issues through our bioBakery Discourse Support Forum. If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.