Open rajneeshdadwal opened 2 years ago
I get a comment when running the phylophlan
graphlan_annotate.py \
--annot graphlan/isolates_annotation.txt \ output_isolates/RAxML_bestTree.input_isolates_refined.tre \ graphlan/isolates_annotated.xml graphlan_annotate.py: command not found
--annot graphlan/isolates_annotation.txt \ output_isolates/RAxML_bestTree.input_isolates_refined.tre \ graphlan/isolates_annotated.xml
graphlan_annotate.py: command not found
graphlan.py \
graphlan/isolates_annotated.xml \ graphlan/saureus_isolates.png \ --dpi 300 graphlan.py: command not found
graphlan/isolates_annotated.xml \ graphlan/saureus_isolates.png \ --dpi 300
graphlan.py: command not found
Hi, I think you need to either install or clone the GraPhlAn repository https://github.com/biobakery/graphlan.
Many thanks, Francesco
I get a comment when running the phylophlan
graphlan_annotate.py \
graphlan.py \