Error while running S aureus example

biobakery / phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

https://huttenhower.sph.harvard.edu/phylophlan

MIT License

128 stars 33 forks source link

Open rajneeshdadwal opened 2 years ago

rajneeshdadwal commented 2 years ago

I get a comment when running the phylophlan

graphlan_annotate.py \

--annot graphlan/isolates_annotation.txt \
output_isolates/RAxML_bestTree.input_isolates_refined.tre \
graphlan/isolates_annotated.xml

graphlan_annotate.py: command not found

graphlan.py \

graphlan/isolates_annotated.xml \
graphlan/saureus_isolates.png \
--dpi 300

graphlan.py: command not found

fasnicar commented 2 years ago

Hi, I think you need to either install or clone the GraPhlAn repository https://github.com/biobakery/graphlan.

Many thanks, Francesco