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biobakery / phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
https://huttenhower.sph.harvard.edu/phylophlan
MIT License
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[Enhancement] Future plans for fungi #94

Closed llk578496 closed 2 years ago

llk578496 commented 2 years ago

Hi @fbeghini ,

We are working on the core-genome on fungi now. And we are really struggling in how to create a core-genome phylogeny for fungi.

May I ask it is possible for phylophlan also include fungi (e.g. Candida auris) in the analysis?

Thank you very much.

fasnicar commented 2 years ago

Hi @llk578496, can I ask you what you mean by your question:

May I ask it is possible for phylophlan also include fungi (e.g. Candida auris) in the analysis?

If you have identified a set of marker genes that you think you can use in your phylogenetic analysis, you can use those as a database of markers and build your fungi-specific phylogeny. I might not get your point, or is this what you would like to do?

Many thanks, Francesco

llk578496 commented 2 years ago

Hi @fasnicar , Yes! That's exactly what I would like to do! Thank you very much!