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biobakery
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phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
https://huttenhower.sph.harvard.edu/phylophlan
MIT License
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Added github CI
#21
nick-youngblut
closed
4 years ago
1
write_default_configs.sh missing
#20
nick-youngblut
closed
4 years ago
3
database of phylophlan 3.0
#19
wangpeng407
closed
4 years ago
1
Using manually downloaded database
#18
alegione
closed
4 years ago
4
phylophlan_strain_finder - wrong threshold arguments
#17
VadimDu
closed
4 years ago
5
Phylophlan_metagenomic
#16
kumar2501
closed
4 years ago
1
Can't locate phylophlan_write_default_configs.sh
#15
swuyts
closed
4 years ago
2
New feature of Phylophlan3
#14
jliu-nj
closed
4 years ago
2
Error in "Refining phylogeny"
#13
jliu-nj
closed
4 years ago
8
question about example 5 step 3
#12
zckoo007
closed
4 years ago
2
question about example 01 S. aureus, Step 4. Add S. aureus reference genomes
#11
zckoo007
closed
4 years ago
5
phylophlan_write_default_configs.sh doesn't write threads parameter for RAxML
#10
ipetrushin
closed
4 years ago
1
local variable 'input_faa_clean' referenced before assignment
#9
mcahn
closed
4 years ago
10
database "phylophlan" not found in "phylophlan_databases"
#8
mcahn
closed
4 years ago
3
local variable 'out' referenced before assignment
#7
mcahn
closed
4 years ago
2
db_dna
#6
ganiatgithub
closed
4 years ago
4
verison
#5
ganiatgithub
closed
4 years ago
1
Package folder not found
#4
thh32
closed
4 years ago
4
Save output of "gene_markers_extraction_rec" compressed in order to avoid very large output files
#3
alexhbnr
closed
4 years ago
3
Scheduler system instead of mulitprocessing
#2
alexhbnr
opened
4 years ago
0
PhyloPhlAn 3.0
#1
fasnicar
closed
4 years ago
0
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