When following the example velvet biobox usage on bioboxes.org - bioboxes throws and error
...
with open(os.path.join(dir_, 'biobox.yaml'), 'r') as f:
IOError: [Errno 2] No such file or directory: '/tmp/tmprgcdRz/biobox.yaml'
This is running in a fresh ubuntu VM (ubuntu 18.04) with 4 core and 8 gigs of ram.
For reference the example usage is
# Fetch the velvet assembler image using Docker
docker pull bioboxes/velvet
# Use the velvet biobox to assemble these reads
biobox run \
short_read_assembler \
bioboxes/velvet \
--input reads.fq.gz \
--output contigs.fa
The fasta file reads.fq.gz is in the same directory.
When following the example velvet biobox usage on bioboxes.org - bioboxes throws and error
This is running in a fresh ubuntu VM (ubuntu 18.04) with 4 core and 8 gigs of ram.
For reference the example usage is
The fasta file reads.fq.gz is in the same directory.