PMC brick - Githubissues

biobricks-ai / biobricks-issues

A repo for consolidating issues

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PMC brick #14

Closed trayneli closed 2 years ago

trayneli commented 2 years ago

Pmc txt files can be accessed here aws s3 ls s3://pmc-oa-opendata/oa_comm/txt/all/ --no-sign-request Documentation files from PMC can be accessed here ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_bulk/oa_comm/txt/

[x] Download pmc txt files and documentation files
[x] Split pmc txt files into front and body sections of paper for data processing.
[x] Process datasets into combined parquet files