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biobricks-ai / biobricks-issues

A repo for consolidating issues
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stringDB #7

Closed jborden closed 2 years ago

jborden commented 2 years ago

https://string-db.org/cgi/download?sessionId=bnTKutRFqrJe Huge database, could be data overlap (between INTERACTION DATA/ ACCESSORY DATA and FULL DATABASE DUMPS)

achatrath commented 2 years ago

I'll try this one. I think the files can be filtered down to a manageable size if we restrict the data to humans. The full database has data on many organisms so the size of the full database is likely not feasible for us.

achatrath commented 2 years ago

This brick runs now:

library(biobricks) install_brick("stringDB") brick_pull("stringDB") brick_load_arrow("stringDB")