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biobricks-ai / biobricks-okg

An open knowledge graph for BioBricks.ai
MIT License
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A5 - Data Governance Source Registration Protocol Definition #5

Closed tomlue closed 8 months ago

tomlue commented 1 year ago

From the grant

In coordination with Theme 2, BioBricks-OKG will be built so that all data can be accessed using FAIR tools like SPARQL...In this deliverable a checklist will be designed for the integration of new data sources and the management of governance of every integrated source. Other proto-okn groups will be contacted to discover other best practices for source governance.

  1. Launch a knowledge graph (we need to talk to theme 2, but a SPARQL/Gremlin consistent graph would make sense like JENA)
  2. Design a checklist for new local graphs
  3. Create some kind of build tool or quality control tool for confirming that graphs are consistent with checklist.
tomlue commented 9 months ago

We could probably add this to status.biobricks.ai i.e "passes governance checks"

tomlue commented 9 months ago

Today we discussed a quick solution to this. Basically we can create a custom test we can run while working on a brick that generates a log file or some kind of file that we can add to the brick which can be read and indexed by status.biobricks.ai which will make it a searchable thing.

So bricks could have

  1. a 'bb-okg' test that passes or fails and is just run manually by brick developers
  2. status.biobricks.ai would read the output of this test
  3. a user could search for all the bricks that have the bb-okg test and additionally filter by those that passed or failed that test.

This is a rough idea at the moment, but a quick solution that let's us identify which bricks belong to bb-okg is ideal.

also, we could probably remove bricktools check to reduce the number of semi-redundant checking systems we have.