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biobricks-ai / ctdbase

CTD is a robust, publicly available database that aims to advance understanding about how environmental exposures affect human health
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URL can't be opened #1

Closed jborden closed 2 years ago

jborden commented 2 years ago

Error as follows:

Running stage 'biobricks-ai/ctdbase/dvc.yaml:download':
> Rscript R/download.R
trying URL 'https://ctdbase.org/downloads/reports/CTD_chem_gene_ixns.tsv.gz'
Error in .f(.x[[i]], .y[[i]], ...) : 
  cannot open URL 'https://ctdbase.org/downloads/reports/CTD_chem_gene_ixns.tsv.gz'
Calls: walk2 -> map2 -> .f
In addition: Warning message:
In .f(.x[[i]], .y[[i]], ...) :
  cannot open URL 'https://ctdbase.org/downloads/reports/CTD_chem_gene_ixns.tsv.gz': HTTP status was '404 Not Found'
Execution halted
ERROR: failed to reproduce 'biobricks-ai/ctdbase/dvc.yaml:download': failed to run: Rscript R/download.R, exited with 1
Error: [ENOENT] Failed to search directory '/Users/james/biobricks/biobricks-ai/ctdbase/data': no such file or directory
achatrath commented 2 years ago

Commit e34c69f995bf7c0e56ba1d6bb847eb8b026f4d1d fixes this issue.