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biocad / cobot-io

Biological data file formats and IO
BSD 3-Clause "New" or "Revised" License
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Change atom indexing in *.mae parser/converter from 0-based to 1-based #29

Closed tiermak closed 4 years ago

tiermak commented 4 years ago

Mae format uses 1-based indexing, while cobot-io converts it to 0-based. As a result, it makes it hard to debug algorithms with indexing scheme different from an input file.

tiermak commented 4 years ago

We decided internally that 0-based indexing is better, so, we did so for PDB. Thus, the issues doesn't make any sense now.