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biocatiit / musclex

Muscle X program suite is a collection of programs intended to assist with analyzing diffraction X-ray images.
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One more function for QF #11

Closed WeikangMa closed 6 years ago

WeikangMa commented 6 years ago

When we use qf and background subtraction, the background images were stored. Can you also sum up all the intensities of each background image, and stored them in a separate csv file.

jiranun commented 6 years ago

Hi Weikang,

I can do that. However, I'm not quite understand what you mean. Do you need to sum intensities of all pixel in each image? Is that mean the cvs file will be like ...

Image name, total intensity of bg image1.tif, 300000 image2.tif, 400000 image3.tif, 200000

Thanks, Jiranun

WeikangMa commented 6 years ago

Yes, exactly

On Wed, Jan 31, 2018 at 09:15 Jiranun Jiratrakanvong < notifications@github.com> wrote:

Hi Weikang,

I can do that. However, I'm not quite understand what you mean. Do you need to sum intensities of all pixel in each image? Is that mean the cvs file will be like ...

Image name, total intensity of bg image1.tif, 300000 image2.tif, 400000 image3.tif, 200000

Thanks, Jiranun

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jiranun commented 6 years ago

This feature has been added to version 1.12 . The cvs file will be under qf_results/bg as background_sum.csv

Thanks