Something wrong with MuscleX

[WeikangMa]

Please take a look. It seems something fundamental and all the program in muscle X is affeated

[jiranun]

Hi Weikang,

Could you please attach the diffraction image that produces this error?

Thanks

[WeikangMa]

I sent one to you via email. I think any image would work. My old machine, haven't update for a while, works fine. It crashed right after most recent update. Please fix it, we badly need it

[jiranun]

Hi Weikang,

I’m sorry I can’t make it by this week. I will do it as fast as I can. However, you can downgrade the version to the older one by using

$pip install musclex==[version number]

e.g.

$pip install musclex==1.10

I will let you know once the problem is fixed

Thanks

[WeikangMa]

I tried to downgrade it, but it wasn’t succeeded. Please fix it at your earliest convenience

On Sat, Mar 3, 2018 at 08:35 Jiranun Jiratrakanvong < notifications@github.com> wrote:

Hi Weikang,

I’m sorry I can’t make it by this week. I will do it as fast as I can. However, you can downgrade the version to the older one by using

$pip install musclex==[version number]

e.g.

$pip install musclex==1.10

I will let you know once the problem is fixed

Thanks

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/biocatiit/musclex/issues/14#issuecomment-370151843, or mute the thread https://github.com/notifications/unsubscribe-auth/AfgvN5agAIaQVXTQ13V6aeRGduSejoo9ks5taqorgaJpZM4SXBsG .

-- Thanks Weikang Ma Biophysics Collaborative Access Team ANL/APS/ Bldg 435B/ Sector 18 9700 S Cass Ave Argonne, IL 60439 Tel:630 252 0508

[jiranun]

This issue has been fixed in version 1.13.1.

Dev notes : This issue was side effect of the new version of lmfit (from 0.9.7 to 0.9.8). They wrote some update here without providing code detail.

Code Solution : setting nan_policy parameter when the model initialized instead of model fitted.