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biocodellc / biocode-lims

The Biocode LIMS plugin integrates Geneious with your lab workflow, allowing you to track processes through tissue sample, extraction, PCR, sequencing and assembly. It is best suited for large scale DNA barcoding efforts.
https://github.com/biocodellc/biocode-lims/wiki
BSD 3-Clause "New" or "Revised" License
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Biocode 3.0.0: ConcurrentModificationException iterating over option values to connect on startup (group 12029) #31

Open jdeck88 opened 8 years ago

jdeck88 commented 8 years ago

Incident Sequence: 1
Incident Age: DuringAPreviousRunOfGeneious
Geneious Version: 9.1.5
OS: Windows 7 (amd64)
Java Version: 1.8.0_71 (64 bit)
Application Build Date: 2016-06-11 21:21
User name: Amanda.Windsor
Memory Usage: 77 / 6296 / 8097 MB [After previous GC: heap total:75/6296 Par Eden Space:0/32 Par Survivor Space:0/4 CMS Old Gen:75/6260]
Data on Network: false
Data Directory: C:\Users\Amanda.Windsor\Geneious 9.1 Data (exists=true)
Application Directory: C:\Program Files\Geneious9 (exists=true)
Stack Analysis: Biocode Plugin 3.0.0
Thread: Thread[Run immediate task,5,main]
Installed plugin list: Biocode Plugin,GenBank Submission,Mafft Multiple Alignment,PHYML,Garli,MrBayes Plugin,RAxML,Species Delimitation
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=62198

[MBP-767] created by talkback

jdeck88 commented 8 years ago

Incident Sequence: 1
Incident Age: Current
Geneious Version: 8.1.6
OS: Mac OS 10.11.3 (x86_64)
Java Version: 1.6.0_65 (64 bit)
Application Build Date: 2015-06-16 09:44
User name: hralicki
Email: hannah.ralicki@uconn.edu
Message: Moving files around
Memory Usage: 447 / 4996 / 8192 MB [After previous GC: heap total:385/4996 Par Eden Space:0/32 Par Survivor Space:4/4 CMS Old Gen:381/4960 CMS Perm Gen:60/256]
Data on Network: false
Data Directory: /Users/hralicki/Geneious 8.1 Data
Stack Analysis: Biocode Plugin 3.0.0
Thread: Thread[Run immediate task,5,]
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=62298

by talkback

jdeck88 commented 7 years ago

Incident Sequence: 1
Incident Age: Current
Geneious Version: 9.1.8
OS: Mac OS 10.12.3 (x86_64)
Java Version: 1.8.0_71 (64 bit)
Application Build Date: 2017-02-14 11:06
User name: cran5048
Email: ecrandall@csumb.edu
Message: Just opened Geneious

Memory Usage: 51 / 996 / 16384 MB [After previous GC: heap total:25/996 Par Eden Space:0/32 Par Survivor Space:4/4 CMS Old Gen:21/960]
Data on Network: false
Data Directory: /Users/cran5048/Geneious 9.1 Data (exists=true)
Application Directory: /Applications/Geneious.app/Contents/Java (exists=true)
Stack Analysis: Biocode Plugin 3.0.1
Thread: Thread[Run immediate task,5,]
Installed plugin list: Biocode Plugin,PAUP* Plugin
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=67991

by talkback

jdeck88 commented 7 years ago

Incident Sequence: 1
Incident Age: Current
Geneious Version: 9.1.8
OS: Mac OS 10.10.5 (x86_64)
Java Version: 1.8.0_71 (64 bit)
Application Build Date: 2017-02-14 11:06
User name: crandall_lab
Memory Usage: 61 / 996 / 8192 MB [After previous GC: heap total:47/996 Par Eden Space:0/32 Par Survivor Space:0/4 CMS Old Gen:47/960]
Data on Network: false
Data Directory: /Users/crandall_lab/Geneious 9.1 Data (exists=true)
Application Directory: /Applications/Geneious.app/Contents/Java (exists=true)
Stack Analysis: Biocode Plugin 3.0.1
Thread: Thread[Run immediate task,5,]
Installed plugin list: Biocode Plugin
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=68473

by talkback

jdeck88 commented 7 years ago

Incident Sequence: 1
Incident Age: Current
Geneious Version: 9.1.8
OS: Mac OS 10.12.4 (x86_64)
Java Version: 1.8.0_71 (64 bit)
Application Build Date: 2017-02-14 11:06
User name: cran5048
Email: ecrandall@csumb.edu
Message: just opened geneious

Memory Usage: 77 / 996 / 16384 MB [After previous GC: heap total:26/996 Par Eden Space:0/32 Par Survivor Space:1/4 CMS Old Gen:24/960]
Data on Network: false
Data Directory: /Users/cran5048/Geneious 9.1 Data (exists=true)
Application Directory: /Applications/Geneious.app/Contents/Java (exists=true)
Stack Analysis: Biocode Plugin 3.0.1
Thread: Thread[Run immediate task,5,]
Installed plugin list: Biocode Plugin,PAUP* Plugin
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=69021

by talkback

jdeck88 commented 7 years ago

Incident Sequence: 1
Incident Age: Current
Geneious Version: 8.1.9
OS: Mac OS 10.11.3 (x86_64)
Java Version: 1.6.0_65 (64 bit)
Application Build Date: 2016-09-27 14:37
User name: hralicki
Email: hannah.ralicki@uconn.edu
Memory Usage: 481 / 1996 / 8192 MB [After previous GC: heap total:369/1996 Par Eden Space:0/32 Par Survivor Space:4/4 CMS Old Gen:365/1960 CMS Perm Gen:50/256]
Data on Network: false
Data Directory: /Users/hralicki/Geneious 8.1 Data
Stack Analysis: Biocode Plugin 3.0.0
Thread: Thread[Run immediate task,5,]
Full Details: http://bios.biomatters.com/viewTalkbackIncident.htm?id=70506

by talkback