biocodellc / dipnet-fims

deprecated: dipnet front end for fims
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Finish loading FASTA data into PRODUCTION FIMS #1

Closed jdeck88 closed 8 years ago

jdeck88 commented 8 years ago

I've loaded the FASTA data into the DEV FIMS instance, need to finish loading FASTA data. I used the script located in John's biscicol.org home directory ~/dipnet/loadDipnetFasta.sh (need to point the server script to production instance).

Waiting on Eric now to fix two FASTA data issues:

inputFilename = /home/jdeck/dipnet/fasta_files/mdfastaQC2_linlae_CO1_ny.fasta

Warning: The following sequences exist in the FASTA file, but not the dataset. SA1AF187922, SA1AF187921, SA1AF187920, SEY3AJ493189, SEY3AJ493188, SA1AF187919, SA1AF187918, SEY3AJ493187, SEY3__AJ493190

inputFilename = /home/jdeck/dipnet/fasta_files/mdfastaQC2_Panpen_COI_MI.fasta

Warning: The following sequences exist in the FASTA file, but not the dataset. TTTACAACGTAGTAGTAACCGCTCATGCTTTTATTATAATCTTCTTTATAGTTATGCCAATTATAATTGGAGGGTTCGGTAATTGGCTAGTCCCAATCATATTAGGAGCTCCTGATATGGCCTTCCCCCGTATAAATAACATAAGATTCTGACTTCTGCCTCCTTCGTTAA CTCTACTTCTAGCAGGAGGGGCAGTAGAAAGAGGTGCCGGTACCGGATGAACGGTCTACCCTCCACTAGCAGCAGGAGTAGCCCATGCGGGAGCATCGGTAGACTTGAGTATCTTCTCTCTTCACTTGGCTGGTGTTTCATCCATTTTAGGAGCCGTTAACTTCATCACCACTGTTATC AACATACGATCCTCCGGTATAACGCTAGACCGTATACCATTATTCGTATGATCCGTCTTCATCACAGCCATTCTTCTGCTGCTCTCGCTACCTGTCCTAGCAGGAGCTAT

jdeck88 commented 8 years ago

This is done.