biocodellc ontology-data-pipeline issues

biocodellc / ontology-data-pipeline

A high-throughput ontology-based pipeline for data integration

BSD 3-Clause "New" or "Revised" License

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issues

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Bump certifi from 2020.6.20 to 2022.12.7

#76 dependabot[bot] opened 1 year ago
0
Bump lxml from 4.5.2 to 4.9.1

#75 dependabot[bot] opened 2 years ago
0
Bump numpy from 1.19.1 to 1.22.0

#74 dependabot[bot] opened 2 years ago
0
Bump lxml from 4.5.2 to 4.6.5

#73 dependabot[bot] closed 2 years ago
1
Bump urllib3 from 1.25.10 to 1.26.5

#72 dependabot[bot] opened 3 years ago
0
Bump py from 1.9.0 to 1.10.0

#71 dependabot[bot] opened 3 years ago
0
Bump lxml from 4.5.2 to 4.6.3

#70 dependabot[bot] closed 2 years ago
1
Bump lxml from 4.5.2 to 4.6.2

#69 dependabot[bot] closed 3 years ago
1
Bump junit from 4.11 to 4.13.1 in /ontopilot/build/META-INF/maven/com.github.jnr/jnr-netdb

#68 dependabot[bot] opened 3 years ago
1
Bump junit from 4.11 to 4.13.1 in /ontopilot/build/META-INF/maven/com.github.jnr/jnr-posix

#67 dependabot[bot] opened 3 years ago
1
Bump junit from 4.11 to 4.13.1 in /ontopilot/build/META-INF/maven/org.apache.commons/commons-compress

#66 dependabot[bot] opened 3 years ago
1
Bump junit from 4.11 to 4.13.1 in /ontopilot/build/META-INF/maven/com.github.jnr/jnr-ffi

#65 dependabot[bot] opened 3 years ago
1
Bump junit from 4.8.2 to 4.13.1 in /ontopilot/build/META-INF/maven/com.github.jnr/jnr-constants

#64 dependabot[bot] opened 3 years ago
1
Bump junit from 4.8.2 to 4.13.1 in /ontopilot/build/META-INF/maven/com.github.jnr/jffi

#63 dependabot[bot] opened 3 years ago
1
Bump junit from 4.10 to 4.13.1 in /ontopilot/build/META-INF/maven/jline/jline

#62 dependabot[bot] opened 3 years ago
1
calling ontopilot python code instead of java jar file

#61 jdeck88 closed 3 years ago
0
Support of interaction datasets

#60 nleguillarme opened 4 years ago
0
removing unneeded reference to default ontology

#59 jdeck88 closed 4 years ago
0
removing deprecated df.ix feature from pandas and replacing with df.iloc

#58 jdeck88 closed 4 years ago
0
Develop

#57 jdeck88 closed 4 years ago
0
adding cython requiremenet

#56 jdeck88 closed 4 years ago
0
updating numpy

#55 jdeck88 closed 4 years ago
0
Failed to perform reasoning on custom data

#54 nleguillarme opened 4 years ago
3
updates to process and config file with better error checking

#53 jdeck88 closed 4 years ago
0
updating README file

#52 jdeck88 closed 4 years ago
0
Failed to perform reasoning on test data

#51 nleguillarme closed 4 years ago
4
updating pipelineImage

#50 jdeck88 closed 4 years ago
0
modifying pipeline image

#49 jdeck88 closed 4 years ago
0
Develop

#48 jdeck88 closed 4 years ago
0
Create LICENSE

#47 jdeck88 closed 4 years ago
0
Bump urllib3 from 1.24.1 to 1.24.2

#46 dependabot[bot] closed 4 years ago
0
Remove pre-processor

#45 jdeck88 opened 5 years ago
0
Automatically create fetch_reasoned.sparql script

#44 jdeck88 opened 5 years ago
0
Strange quoting causes reasoner to crash

#43 jdeck88 opened 5 years ago
0
Update README.md

#42 ramonawalls closed 5 years ago
0
Get labelmap to work when labels are specified without the preprocessor

#41 jdeck88 closed 5 years ago
1
Triplifier breaks if column without specified data comes up.

#40 jdeck88 closed 5 years ago
1
Specify required values either in rules.csv or in a column in mapping.csv

#39 jdeck88 closed 5 years ago
1
Headers.csv file may be unnecessary

#38 jdeck88 closed 5 years ago
2
Create versioned releases

#37 jdeck88 opened 5 years ago
1
Using lists

#36 jdeck88 opened 5 years ago
1
Using Identifiers

#35 jdeck88 opened 5 years ago
0
Cleaning up pipeline codebase to better enable multi-project calls

#34 jdeck88 closed 5 years ago
0
Clean up all tests..

#33 jdeck88 closed 5 years ago
1
De-couple PPO project from ppo-data-pipeline

#32 jdeck88 closed 5 years ago
1
Reference config/headers.csv in preprocessor abstract class

#31 jdeck88 closed 5 years ago
1
Write data tests against reasoned Turtle output

#30 jdeck88 closed 5 years ago
1
Update phenophase_descriptions.csv

#29 lbrensk closed 6 years ago
0
Finish creating ammending EZIDs to handle incoming suffixes

#28 jdeck88 closed 5 years ago
1
Update README.md

#27 ramonawalls closed 6 years ago
0