The input data

[jiaojiaoguan]

Hi，

I am not sure what I should input.

For example: I have some contigs "test.fasta"

contig1 ATCGATCGTTG

First, I use prodigal to predict the genes of contig and get the "test.fna" file

contig1_1 ATCG contig1_2 CGAT

Last, I input the "test.fna" stack exec -- vpf-class --data-index ndex.yaml -i test.fna -o jiayu --workers 4 --chunk-size 2000

or can I input "test.fasta" file directly not the "test.fna"? stack exec -- vpf-class --data-index ndex.yaml -i test.fasta -o jiayu --workers 4 --chunk-size 2000

[bielr]

Hi,

You must input test.fasta directly. VPF-Class executes prodigal internally (only proteins are used afterwards).