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biocommons / hgvs

Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
https://hgvs.readthedocs.io/
Apache License 2.0
239 stars 94 forks source link

Make data provider config explicit #645

Open reece opened 1 year ago

reece commented 1 year ago

The hgvs dataprovider has way too much implicit behavior, which creates surprises for users and developers.

Drop all implicit behavior. hdp.connect() should require a URL.

Then, put all of the configuration in hgvs.easy and make that the sole place of implicit config.

github-actions[bot] commented 9 months ago

This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.

github-actions[bot] commented 9 months ago

This issue was closed because it has been stalled for 7 days with no activity.

reece commented 7 months ago

This issue was closed by stalebot. It has been reopened to give more time for community review. See biocommons coding guidelines for stale issue and pull request policies. This resurrection is expected to be a one-time event.

github-actions[bot] commented 4 months ago

This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days.

github-actions[bot] commented 3 months ago

This issue was closed because it has been stalled for 7 days with no activity.