Model refactor (#280)

[HadleyKing]

• Change bcodb directory to config directory

Changes to be committed: modified: .gitignore deleted: bcodb/settings.py renamed: bcodb/init.py -> config/init.py renamed: bcodb/asgi.py -> config/asgi.py renamed: bcodb/fixtures/local_data.json -> config/fixtures/local_data.json renamed: bcodb/fixtures/test_portal.json -> config/fixtures/test_portal.json renamed: bcodb/urls.py -> config/urls.py renamed: bcodb/wsgi.py -> config/wsgi.py modified: manage.py

• Create NewUser model and remove new_user model

changed model behind /api/accounts/new/ Changes to be committed: modified: api/admin.py new file: api/migrations/0006_delete_new_users.py modified: api/models.py deleted: api/scripts/method_specific/POST_api_accounts_new.py modified: api/urls.py modified: api/views.py modified: authentication/admin.py modified: authentication/apis.py new file: authentication/migrations/0002_newuser.py modified: authentication/models.py modified: authentication/selectors.py modified: authentication/services.py modified: tests/fixtures/test_data.json modified: tests/test_views/test_api_account_activate.py modified: tests/test_views/test_api_account_new.py

• Add example values to test account request

Changes to be committed: modified: authentication/apis.py new file: docs/refactor.md

• Account activation has been enabled.

On branch account_authorization Changes to be committed: modified: api/urls.py modified: api/views.py modified: authentication/apis.py modified: authentication/selectors.py modified: authentication/services.py modified: authentication/urls.py

• Account authorization (#277)

• Account activation has been enabled.

On branch account_authorization Changes to be committed: modified: api/urls.py modified: api/views.py modified: authentication/apis.py modified: authentication/selectors.py modified: authentication/services.py modified: authentication/urls.py

• get_new_user

• Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py

Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Framework for BioCompute model

Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py

• Added files for Prefix model

Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py

• Tests for authentication

Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Swagger move (#283)

• Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py

Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Framework for BioCompute model

Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py

• Added files for Prefix model

Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py

• Tests for authentication

Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Move Swagger files and implement BCO draft create

Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/services.py modified: biocompute/urls.py new file: config/services.py modified: config/urls.py modified: docs/refactor.md modified: prefix/urls.py new file: tests/fixtures/example_bco.py new file: tests/test_views/test_api_objects_drafts_create.py

• Doc fix in Bco.models Changes to be committed: modified: biocompute/models.py

• Biocompute model (#284)

• Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py

Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Framework for BioCompute model

Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py

• Added files for Prefix model

Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py

• Tests for authentication

Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json

• Move Swagger files and implement BCO draft create

Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/services.py modified: biocompute/urls.py new file: config/services.py modified: config/urls.py modified: docs/refactor.md modified: prefix/urls.py new file: tests/fixtures/example_bco.py new file: tests/test_views/test_api_objects_drafts_create.py

• Doc fix in Bco.models Changes to be committed: modified: biocompute/models.py

• Updated biocompute.model and prefix.model

Added the DraftsCreateApi and tests. This included serializers for BCO creation Changes to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: config/services.py modified: prefix/models.py modified: prefix/services.py modified: test.json modified: tests/fixtures/test_data.json new file: tests/test_views/test_api_objects_drafts_create.py

• Implemented PrefixesCreateApi

Changes to be committed: modified: biocompute/apis.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/apis.py modified: prefix/services.py modified: prefix/urls.py modified: search/apis.py modified: tests/test_views/test_api_auth_remove.py modified: tests/test_views/test_api_objects_drafts_create.py new file: tests/test_views/test_api_prefixes_create.py

• Added Prefix management URLs and APIs

Changes to be committed: modified: config/fixtures/local_data.json modified: docs/refactor.md modified: prefix/apis.py modified: prefix/services.py modified: prefix/urls.py modified: tests/fixtures/test_data.json deleted: tests/test_views/test_api_prefixes_create.py new file: tests/test_views/test_prefixes_create.py new file: tests/test_views/test_prefixes_modify.py

• Cleaning up some things Changes to be committed: modified: biocompute/apis.py modified: biocompute/migrations/0001_initial.py modified: prefix/apis.py modified: prefix/migrations/0001_initial.py new file: tests/test_views/test_account_activate.py new file: tests/test_views/test_account_describe.py new file: tests/test_views/test_account_new.py new file: tests/test_views/test_auth_add.py new file: tests/test_views/test_auth_remove.py new file: tests/test_views/test_auth_reset_token.py new file: tests/test_views/test_objects_drafts_create.py

• Add prefix creation function Changes to be committed: modified: authentication/services.py modified: biocompute/models.py modified: config/settings.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/models.py modified: prefix/services.py modified: tests/test_views/test_api_objects_drafts_create.py

• Add Prefix Modify API endpoint On branch prefix_perms Your branch is up to date with 'origin/prefix_perms'.

Changes to be committed: modified: config/services.py modified: prefix/apis.py modified: prefix/models.py modified: prefix/selectors.py modified: prefix/services.py

• response_c

• Add DraftRetrieveApi

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json

• Update testing functions

Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py

• Add DraftRetrieveApi

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json

• Update testing functions

Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py

• Update to Test functions

Changes to be committed: modified: biocompute/migrations/0001_initial.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/migrations/0001_initial.py modified: prefix/services.py new file: tests/fixtures/bco_dump.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py deleted: tests/test_apis/test_api_objects_drafts_create.py new file: tests/test_apis/test_api_prefix/init.py renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py deleted: tests/test_apis/test_auth_remove.py new file: tests/test_apis/test_biocompute/init.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Bco perms (#293)

• Add DraftRetrieveApi

To do this functions related to Prefixes and the associated permissions were created

Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json

• Update testing functions

Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py

• Update to Test functions

Changes to be committed: modified: biocompute/migrations/0001_initial.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/migrations/0001_initial.py modified: prefix/services.py new file: tests/fixtures/bco_dump.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py deleted: tests/test_apis/test_api_objects_drafts_create.py new file: tests/test_apis/test_api_prefix/init.py renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py deleted: tests/test_apis/test_auth_remove.py new file: tests/test_apis/test_biocompute/init.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Add access_count incrementer to DraftRetrieveApi

Changes to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: prefix/services.py

• Added PublishedRetrieveApi class Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: config/urls.py

• Update test DB and testing functions

Changes to be committed: modified: config/fixtures/local_data.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_objects_drafts_create.py deleted: tests/test_apis/test_auth_add.py deleted: tests/test_apis/test_auth_remove.py deleted: tests/test_apis/test_auth_reset_token.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_prefixes_create.py deleted: tests/test_apis/test_prefixes_modify.py

• Add DraftsModifyApi

Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: prefix/selectors.py deleted: tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• test for objects_drafts_create

Changes to be committed: new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• split("/")

• Publish draft (#308)

• Add DraftsModifyApi

Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: prefix/selectors.py deleted: tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Add IEEE schema Changes to be committed: new file: .secrets new file: config/IEEE/2791object.json new file: config/IEEE/description_domain.json new file: config/IEEE/error_domain.json new file: config/IEEE/execution_domain.json new file: config/IEEE/io_domain.json new file: config/IEEE/parametric_domain.json new file: config/IEEE/provenance_domain.json new file: config/IEEE/usability_domain.json

• test_objects_drafts_create Changes to be committed: new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Fix test Changes to be committed: modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Enable publish bco endpoint

This included a great many supporting functions and permission checks to accomplish. Also added the validate functions to the codebase

Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/services.py modified: docs/refactor.md modified: prefix/selectors.py new file: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

• Add BCO Score to model.

Also added functions and methods for BCO Score. Updates to the BCO admin panel. Updates to the test_data.json and local_data.json Fix # 310 Changes to be committed: modified: authentication/migrations/0001_initial.py modified: biocompute/admin.py modified: biocompute/apis.py modified: biocompute/migrations/0001_initial.py modified: biocompute/models.py modified: biocompute/services.py new file: config/bco_scores.py modified: config/fixtures/local_data.json modified: tests/fixtures/test_data.json

• Add BCODB search API endpoint.

Changes to be committed: modified: biocompute/apis.py modified: search/apis.py modified: search/selectors.py modified: search/urls.py

• Add POST search Changes to be committed: modified: authentication/apis.py modified: search/apis.py

• Updated config file to .secrets

also updated accounts/describe Changes to be committed: modified: .gitignore new file: .secrets.example modified: authentication/selectors.py modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: config/settings.py deleted: server.conf deleted: sever.conf.example

• Fix config/urls.py error Changes to be committed: deleted: .secrets modified: config/settings.py modified: config/urls.py

• Refactor config/services.py::response_constructor Changes to be committed: modified: config/services.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.py

• Prefix registry (#318)

• Created test_objects_drafts_modify, hasn't passed test yet

• Created test_objects_drafts_modify, hasn't passed test yet

• Created test_objects_drafts_modify, hasn't passed test yet

• new tests

• Update modify_prefix permissions Changes to be committed: modified: authentication/selectors.py modified: config/fixtures/local_data.json modified: prefix/services.py

• Created and tested test_objects_drafts_modify API

• Fixes for Prefix creation

Changes to be committed: modified: config/services.py modified: prefix/apis.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.py

• Add UserSearch endpoint

Changes to be committed: modified: prefix/apis.py modified: prefix/selectors.py modified: search/apis.py modified: search/urls.py

• Fixes for deployment

  Changes to be committed: modified: .secrets.example modified: admin_only/bco_api.service modified: biocompute/apis.py modified: config/fixtures/test_portal.json modified: config/settings.py modified: tests/fixtures/test_data.json modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• test_objects_drafts_publish failed. Kicking back to Hadley for more investigation

• Update bco_api.conf

Changes to be committed: modified: admin_only/bco_api.conf

---

• Fixes for testing files

Changes to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: config/bco_scores.py modified: config/services.py modified: config/settings.py modified: config/urls.py modified: tests/fixtures/test_data.json renamed: tests/fixtures/example_bco.py -> tests/fixtures/testing_bcos.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.py modified: tests/test_apis/test_biocompute/test_objects_drafts_modify.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

• "derrived_from": []

• fix test

• Add Validate url endpoint

Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

• Update create test to include HOSTNAME

Changes to be committed: modified: config/services.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Rollback status for validation

Changes to be committed: modified: biocompute/apis.py

• Changes to be committed: modified: biocompute/apis.py

• Typo fix Changes to be committed: modified: biocompute/apis.py

• Add test_portal.json for testing

Changes to be committed: modified: config/fixtures/test_portal.json

• Testing fixes

Changes to be committed: modified: admin_only/bco_api.conf modified: config/fixtures/test_portal.json

• Fix for draft publish

Changes to be committed: modified: config/services.py

• Add new_bco_instance.save()

Changes to be committed: modified: biocompute/services.py modified: config/services.py

• CustomJSONWebTokenAuthentication for GET Pub BCO Changes to be committed: modified: biocompute/apis.py

• Updates to authentication.apis.py Changes to be committed: modified: authentication/apis.py modified: authentication/services.py modified: search/apis.py

• Updates to biocompute.apis.py

Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: search/apis.py modified: tests/fixtures/testing_bcos.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py

• Remove print statements

Changes to be committed: modified: authentication/apis.py modified: authentication/services.py modified: authentication/urls.py modified: biocompute/apis.py modified: biocompute/services.py modified: config/urls.py modified: prefix/services.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py

• Updates to prefix.apis

Changes to be committed: modified: prefix/apis.py

• print(

• change publish bco rejected response

On branch docs Your branch is up to date with 'origin/docs'.

---

[gitguardian[bot]]

⚠️ GitGuardian has uncovered 3 secrets following the scan of your pull request.

Please consider investigating the findings and remediating the incidents. Failure to do so may lead to compromising the associated services or software components.

🔎 Detected hardcoded secrets in your pull request

| GitGuardian id | GitGuardian status | Secret | Commit | Filename | | | -------------- | ------------------ | ------------------------------ | ---------------- | --------------- | -------------------- | | [4444555](https://dashboard.gitguardian.com/workspace/296511/incidents/4444555?occurrence=135415605) | Triggered | Django Secret Key | 2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70 | bcodb/settings.py | [View secret](https://github.com/biocompute-objects/bco_api/commit/2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70#diff-c4a824e95739c0ba1d2330805f827804a8ab331feffec49e953b98db5529b129L37) | | [4444564](https://dashboard.gitguardian.com/workspace/296511/incidents/4444564?occurrence=135415604) | Triggered | Generic High Entropy Secret | 2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70 | authentication/services.py | [View secret](https://github.com/biocompute-objects/bco_api/commit/2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70#diff-0ef1b5e13092797bfc2644cc86859739a86650a75d9410c01934fc66200a4d77L29) | | [4444557](https://dashboard.gitguardian.com/workspace/296511/incidents/4444557?occurrence=135415606) | Triggered | Generic High Entropy Secret | 2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70 | api/views.py | [View secret](https://github.com/biocompute-objects/bco_api/commit/2c4e0d2fb8e81b9ce565acea0fdd03aa5747aa70#diff-7fb412808754eb12ee1b172c34c44eb9ce58b3bba43d62ffcb986ad7917588a8L537) |

🛠 Guidelines to remediate hardcoded secrets

1. Understand the implications of revoking this secret by investigating where it is used in your code. 2. Replace and store your secrets safely. [Learn here](https://blog.gitguardian.com/secrets-api-management?utm_source=product&utm_medium=GitHub_checks&utm_campaign=check_run_comment) the best practices. 3. Revoke and [rotate these secrets](https://docs.gitguardian.com/secrets-detection/secrets-detection-engine/detectors/specifics/secret_key_in_django_config#revoke-the-secret?utm_source=product&utm_medium=GitHub_checks&utm_campaign=check_run_comment). 4. If possible, [rewrite git history](https://blog.gitguardian.com/rewriting-git-history-cheatsheet?utm_source=product&utm_medium=GitHub_checks&utm_campaign=check_run_comment). Rewriting git history is not a trivial act. You might completely break other contributing developers' workflow and you risk accidentally deleting legitimate data. To avoid such incidents in the future consider - following these [best practices](https://blog.gitguardian.com/secrets-api-management/?utm_source=product&utm_medium=GitHub_checks&utm_campaign=check_run_comment) for managing and storing secrets including API keys and other credentials - install [secret detection on pre-commit](https://docs.gitguardian.com/ggshield-docs/integrations/git-hooks/pre-commit?utm_source=product&utm_medium=GitHub_checks&utm_campaign=check_run_comment) to catch secret before it leaves your machine and ease remediation.

---

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