Closed HadleyKing closed 4 months ago
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bcodb
directory toconfig
directoryChanges to be committed: modified: .gitignore deleted: bcodb/settings.py renamed: bcodb/init.py -> config/init.py renamed: bcodb/asgi.py -> config/asgi.py renamed: bcodb/fixtures/local_data.json -> config/fixtures/local_data.json renamed: bcodb/fixtures/test_portal.json -> config/fixtures/test_portal.json renamed: bcodb/urls.py -> config/urls.py renamed: bcodb/wsgi.py -> config/wsgi.py modified: manage.py
changed model behind
/api/accounts/new/
Changes to be committed: modified: api/admin.py new file: api/migrations/0006_delete_new_users.py modified: api/models.py deleted: api/scripts/method_specific/POST_api_accounts_new.py modified: api/urls.py modified: api/views.py modified: authentication/admin.py modified: authentication/apis.py new file: authentication/migrations/0002_newuser.py modified: authentication/models.py modified: authentication/selectors.py modified: authentication/services.py modified: tests/fixtures/test_data.json modified: tests/test_views/test_api_account_activate.py modified: tests/test_views/test_api_account_new.pyChanges to be committed: modified: authentication/apis.py new file: docs/refactor.md
On branch account_authorization Changes to be committed: modified: api/urls.py modified: api/views.py modified: authentication/apis.py modified: authentication/selectors.py modified: authentication/services.py modified: authentication/urls.py
Account authorization (#277)
Account activation has been enabled.
On branch account_authorization Changes to be committed: modified: api/urls.py modified: api/views.py modified: authentication/apis.py modified: authentication/selectors.py modified: authentication/services.py modified: authentication/urls.py
get_new_user
Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py
Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py
Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py
Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Swagger move (#283)
Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py
Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py
Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py
Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/services.py modified: biocompute/urls.py new file: config/services.py modified: config/urls.py modified: docs/refactor.md modified: prefix/urls.py new file: tests/fixtures/example_bco.py new file: tests/test_views/test_api_objects_drafts_create.py
Doc fix in Bco.models Changes to be committed: modified: biocompute/models.py
Biocompute model (#284)
Remove API app Changes to be committed: deleted: api/init.py deleted: api/admin.py deleted: api/apps.py deleted: api/fixtures/bootstrap.json deleted: api/fixtures/metafixtures deleted: api/fixtures/metafixtures.json deleted: api/keys.sh deleted: api/migrations/0001_initial.py deleted: api/migrations/0002_auto_20220124_2356.py deleted: api/migrations/0003_rename_meta_table_prefix_table.py deleted: api/migrations/0004_rename_group_info_groupinfo.py deleted: api/migrations/0005_rename_prefixes_prefix.py deleted: api/migrations/0006_delete_new_users.py deleted: api/migrations/init.py deleted: api/model/init.py deleted: api/model/groups.py deleted: api/model/prefix.py deleted: api/models.py deleted: api/permissions.py deleted: api/rdb.sh deleted: api/request_definitions/GET.schema deleted: api/request_definitions/POST.schema deleted: api/request_definitions/templates/DELETE_delete_object_by_id.schema deleted: api/request_definitions/templates/GET_activate_account.schema deleted: api/request_definitions/templates/GET_get_object_by_id.schema deleted: api/request_definitions/templates/GET_retrieve_available_schema.schema deleted: api/request_definitions/templates/POST_convert_existing_object_between_schemas.schema deleted: api/request_definitions/templates/POST_convert_payload_to_schema.schema deleted: api/request_definitions/templates/POST_new_account.schema deleted: api/request_definitions/templates/POST_object_listing_by_token.schema deleted: api/request_definitions/templates/POST_objects_draft.schema deleted: api/request_definitions/templates/POST_objects_publish.schema deleted: api/request_definitions/templates/POST_read_object.schema deleted: api/request_definitions/templates/POST_validate_payload_against_schema.schema deleted: api/scripts/init.py deleted: api/scripts/method_specific/GET_draft_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id.py deleted: api/scripts/method_specific/GET_published_object_by_id_with_version.py deleted: api/scripts/method_specific/GET_retrieve_available_schema.py deleted: api/scripts/method_specific/POST_api_objects_drafts_create.py deleted: api/scripts/method_specific/POST_api_objects_drafts_delete.py deleted: api/scripts/method_specific/POST_api_objects_drafts_modify.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions.py deleted: api/scripts/method_specific/POST_api_objects_drafts_permissions_set.py deleted: api/scripts/method_specific/POST_api_objects_drafts_publish.py deleted: api/scripts/method_specific/POST_api_objects_drafts_read.py deleted: api/scripts/method_specific/POST_api_objects_drafts_token.py deleted: api/scripts/method_specific/POST_api_objects_publish.py deleted: api/scripts/method_specific/POST_api_objects_published.py deleted: api/scripts/method_specific/POST_api_objects_search.py deleted: api/scripts/method_specific/POST_api_objects_token.py deleted: api/scripts/method_specific/POST_validate_payload_against_schema.py deleted: api/scripts/method_specific/init.py deleted: api/scripts/utilities/DbUtils.py deleted: api/scripts/utilities/FileUtils.py deleted: api/scripts/utilities/JsonUtils.py deleted: api/scripts/utilities/RequestUtils.py deleted: api/scripts/utilities/ResponseUtils.py deleted: api/scripts/utilities/SettingsUtils.py deleted: api/scripts/utilities/UserUtils.py deleted: api/scripts/utilities/init.py deleted: api/serializers.py deleted: api/signals.py deleted: api/templates/api/account_activation_message.html deleted: api/urls.py deleted: api/validation_definitions/IEEE/2791object.json deleted: api/validation_definitions/IEEE/description_domain.json deleted: api/validation_definitions/IEEE/error_domain.json deleted: api/validation_definitions/IEEE/execution_domain.json deleted: api/validation_definitions/IEEE/io_domain.json deleted: api/validation_definitions/IEEE/parametric_domain.json deleted: api/validation_definitions/IEEE/provenance_domain.json deleted: api/validation_definitions/IEEE/usability_domain.json deleted: api/validation_definitions/IEEE_sub/IEEE2791-2020.schema deleted: api/validation_definitions/IEEE_sub/domains/description_domain.json deleted: api/validation_definitions/IEEE_sub/domains/error_domain.json deleted: api/validation_definitions/IEEE_sub/domains/execution_domain.json deleted: api/validation_definitions/IEEE_sub/domains/io_domain.json deleted: api/validation_definitions/IEEE_sub/domains/parametric_domain.json deleted: api/validation_definitions/IEEE_sub/domains/provenance_domain.json deleted: api/validation_definitions/IEEE_sub/domains/usability_domain.json deleted: api/validation_definitions/uri_external deleted: api/views.py new file: config/settings.py modified: config/urls.py
Changes not staged for commit: modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py modified: docs/refactor.md modified: search/selectors.py modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_accounts_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Changes to be committed: new file: biocompute/init.py new file: biocompute/admin.py new file: biocompute/apis.py new file: biocompute/migrations/init.py new file: biocompute/models.py new file: biocompute/selectors.py new file: biocompute/services.py new file: biocompute/urls.py
Changes to be committed: new file: prefix/init.py new file: prefix/admin.py new file: prefix/apis.py new file: prefix/apps.py new file: prefix/migrations/init.py new file: prefix/models.py new file: prefix/selectors.py new file: prefix/services.py new file: prefix/urls.py
Changes to be committed: modified: .gitignore modified: authentication/apis.py modified: authentication/migrations/0001_initial.py deleted: authentication/migrations/0002_newuser.py modified: authentication/services.py new file: biocompute/migrations/0001_initial.py modified: docs/refactor.md new file: prefix/migrations/0001_initial.py modified: search/selectors.py new file: test.json new file: tests/fixtures/old_test_data.json modified: tests/fixtures/test_data.json deleted: tests/test_database.py deleted: tests/test_fixtures.py deleted: tests/test_models modified: tests/test_views/test_api_account_activate.py renamed: tests/test_views/test_api_accounts_describe.py -> tests/test_views/test_api_account_describe.py modified: tests/test_views/test_api_auth_add.py modified: tests/test_views/test_api_auth_reset_token.py deleted: tests/test_views/test_api_groups_group_info.py deleted: tests/test_views/test_api_groups_modify.py deleted: tests/test_views/test_api_objects.py deleted: tests/test_views/test_api_objects_drafts_create.py deleted: tests/test_views/test_api_objects_drafts_modify.py deleted: tests/test_views/test_api_objects_drafts_publish.py deleted: tests/test_views/test_api_objects_search.py deleted: tests/test_views/test_api_objects_validate.py deleted: tests/test_views/test_api_prefixes_create.py deleted: tests/test_views/test_api_prefixes_token.py deleted: tests/test_views/test_get_object_id_draft.py deleted: tests/test_views/test_get_objectid.py deleted: tests/test_views/test_published_object_by_id.py modified: token.json
Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/services.py modified: biocompute/urls.py new file: config/services.py modified: config/urls.py modified: docs/refactor.md modified: prefix/urls.py new file: tests/fixtures/example_bco.py new file: tests/test_views/test_api_objects_drafts_create.py
Doc fix in Bco.models Changes to be committed: modified: biocompute/models.py
Updated biocompute.model and prefix.model
Added the DraftsCreateApi and tests. This included serializers for BCO creation Changes to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: config/services.py modified: prefix/models.py modified: prefix/services.py modified: test.json modified: tests/fixtures/test_data.json new file: tests/test_views/test_api_objects_drafts_create.py
Changes to be committed: modified: biocompute/apis.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/apis.py modified: prefix/services.py modified: prefix/urls.py modified: search/apis.py modified: tests/test_views/test_api_auth_remove.py modified: tests/test_views/test_api_objects_drafts_create.py new file: tests/test_views/test_api_prefixes_create.py
Changes to be committed: modified: config/fixtures/local_data.json modified: docs/refactor.md modified: prefix/apis.py modified: prefix/services.py modified: prefix/urls.py modified: tests/fixtures/test_data.json deleted: tests/test_views/test_api_prefixes_create.py new file: tests/test_views/test_prefixes_create.py new file: tests/test_views/test_prefixes_modify.py
Cleaning up some things Changes to be committed: modified: biocompute/apis.py modified: biocompute/migrations/0001_initial.py modified: prefix/apis.py modified: prefix/migrations/0001_initial.py new file: tests/test_views/test_account_activate.py new file: tests/test_views/test_account_describe.py new file: tests/test_views/test_account_new.py new file: tests/test_views/test_auth_add.py new file: tests/test_views/test_auth_remove.py new file: tests/test_views/test_auth_reset_token.py new file: tests/test_views/test_objects_drafts_create.py
Add prefix creation function Changes to be committed: modified: authentication/services.py modified: biocompute/models.py modified: config/settings.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/models.py modified: prefix/services.py modified: tests/test_views/test_api_objects_drafts_create.py
Add Prefix Modify API endpoint On branch prefix_perms Your branch is up to date with 'origin/prefix_perms'.
Changes to be committed: modified: config/services.py modified: prefix/apis.py modified: prefix/models.py modified: prefix/selectors.py modified: prefix/services.py
response_c
Add
DraftRetrieveApi
To do this functions related to Prefixes and the associated permissions were created
Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json
Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py
DraftRetrieveApi
To do this functions related to Prefixes and the associated permissions were created
Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json
Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py
Changes to be committed: modified: biocompute/migrations/0001_initial.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/migrations/0001_initial.py modified: prefix/services.py new file: tests/fixtures/bco_dump.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py deleted: tests/test_apis/test_api_objects_drafts_create.py new file: tests/test_apis/test_api_prefix/init.py renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py deleted: tests/test_apis/test_auth_remove.py new file: tests/test_apis/test_biocompute/init.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py
Bco perms (#293)
Add
DraftRetrieveApi
To do this functions related to Prefixes and the associated permissions were created
Changes to be committed: modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/asgi.py modified: config/fixtures/local_data.json modified: config/services.py modified: config/urls.py modified: prefix/selectors.py modified: prefix/services.py deleted: test.json modified: tests/fixtures/example_bco.py modified: tests/fixtures/test_data.json deleted: token.json
Created subdirectory and moved test functions Changes to be committed: renamed: tests/test_views/init.py -> tests/test_apis/init.py new file: tests/test_apis/test_api_authentication/init.py renamed: tests/test_views/test_account_activate.py -> tests/test_apis/test_api_authentication/test_account_activate.py renamed: tests/test_views/test_account_describe.py -> tests/test_apis/test_api_authentication/test_account_describe.py renamed: tests/test_views/test_account_new.py -> tests/test_apis/test_api_authentication/test_account_new.py renamed: tests/test_views/test_api_auth_add.py -> tests/test_apis/test_api_authentication/test_api_auth_add.py renamed: tests/test_views/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/test_api_auth_remove.py renamed: tests/test_views/test_api_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_views/test_api_objects_drafts_create.py -> tests/test_apis/test_api_objects_drafts_create.py renamed: tests/test_views/test_auth_add.py -> tests/test_apis/test_auth_add.py renamed: tests/test_views/test_auth_remove.py -> tests/test_apis/test_auth_remove.py renamed: tests/test_views/test_auth_reset_token.py -> tests/test_apis/test_auth_reset_token.py renamed: tests/test_views/test_objects_drafts_create.py -> tests/test_apis/test_objects_drafts_create.py renamed: tests/test_views/test_prefixes_create.py -> tests/test_apis/test_prefixes_create.py new file: tests/test_apis/test_prefixes_modify.py deleted: tests/test_views/test_api_account_activate.py deleted: tests/test_views/test_api_account_describe.py deleted: tests/test_views/test_api_account_new.py deleted: tests/test_views/test_prefixes_modify.py
Changes to be committed: modified: biocompute/migrations/0001_initial.py modified: docs/refactor.md modified: prefix/apis.py modified: prefix/migrations/0001_initial.py modified: prefix/services.py new file: tests/fixtures/bco_dump.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_authentication/test_api_auth_add.py deleted: tests/test_apis/test_api_authentication/test_api_auth_reset_token.py renamed: tests/test_apis/test_auth_add.py -> tests/test_apis/test_api_authentication/test_auth_add.py renamed: tests/test_apis/test_auth_reset_token.py -> tests/test_apis/test_api_authentication/test_auth_reset_token.py renamed: tests/test_apis/test_api_authentication/test_api_auth_remove.py -> tests/test_apis/test_api_authentication/testi_auth_remove.py deleted: tests/test_apis/test_api_objects_drafts_create.py new file: tests/test_apis/test_api_prefix/init.py renamed: tests/test_apis/test_prefixes_create.py -> tests/test_apis/test_api_prefix/test_prefixes_create.py renamed: tests/test_apis/test_prefixes_modify.py -> tests/test_apis/test_api_prefix/test_prefixes_modify.py deleted: tests/test_apis/test_auth_remove.py new file: tests/test_apis/test_biocompute/init.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/test_objects_drafts_create.py
access_count
incrementer to DraftRetrieveApiChanges to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: prefix/services.py
Added PublishedRetrieveApi class Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: config/urls.py
Update test DB and testing functions
Changes to be committed: modified: config/fixtures/local_data.json modified: tests/fixtures/test_data.json deleted: tests/test_apis/test_api_objects_drafts_create.py deleted: tests/test_apis/test_auth_add.py deleted: tests/test_apis/test_auth_remove.py deleted: tests/test_apis/test_auth_reset_token.py renamed: tests/test_apis/test_objects_drafts_create.py -> tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_prefixes_create.py deleted: tests/test_apis/test_prefixes_modify.py
Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: prefix/selectors.py deleted: tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Changes to be committed: new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py
split("/")
Publish draft (#308)
Add DraftsModifyApi
Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: prefix/selectors.py deleted: tests/test_apis/test_biocompute/objects_drafts_create.py deleted: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Add IEEE schema Changes to be committed: new file: .secrets new file: config/IEEE/2791object.json new file: config/IEEE/description_domain.json new file: config/IEEE/error_domain.json new file: config/IEEE/execution_domain.json new file: config/IEEE/io_domain.json new file: config/IEEE/parametric_domain.json new file: config/IEEE/provenance_domain.json new file: config/IEEE/usability_domain.json
test_objects_drafts_create Changes to be committed: new file: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Fix test Changes to be committed: modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Enable publish bco endpoint
This included a great many supporting functions and permission checks to accomplish. Also added the validate functions to the codebase
Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: biocompute/services.py modified: biocompute/urls.py modified: config/services.py modified: docs/refactor.md modified: prefix/selectors.py new file: tests/test_apis/test_biocompute/test_objects_drafts_publish.py
Also added functions and methods for BCO Score. Updates to the BCO admin panel. Updates to the
test_data.json
andlocal_data.json
Fix # 310 Changes to be committed: modified: authentication/migrations/0001_initial.py modified: biocompute/admin.py modified: biocompute/apis.py modified: biocompute/migrations/0001_initial.py modified: biocompute/models.py modified: biocompute/services.py new file: config/bco_scores.py modified: config/fixtures/local_data.json modified: tests/fixtures/test_data.jsonChanges to be committed: modified: biocompute/apis.py modified: search/apis.py modified: search/selectors.py modified: search/urls.py
Add POST search Changes to be committed: modified: authentication/apis.py modified: search/apis.py
Updated config file to
.secrets
also updated accounts/describe Changes to be committed: modified: .gitignore new file: .secrets.example modified: authentication/selectors.py modified: biocompute/apis.py modified: biocompute/models.py modified: biocompute/selectors.py modified: config/settings.py deleted: server.conf deleted: sever.conf.example
Fix config/urls.py error Changes to be committed: deleted: .secrets modified: config/settings.py modified: config/urls.py
Refactor
config/services.py::response_constructor
Changes to be committed: modified: config/services.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.pyPrefix registry (#318)
Created test_objects_drafts_modify, hasn't passed test yet
Created test_objects_drafts_modify, hasn't passed test yet
Created test_objects_drafts_modify, hasn't passed test yet
new tests
Update modify_prefix permissions Changes to be committed: modified: authentication/selectors.py modified: config/fixtures/local_data.json modified: prefix/services.py
Created and tested test_objects_drafts_modify API
Fixes for Prefix creation
Changes to be committed: modified: config/services.py modified: prefix/apis.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.py
Changes to be committed: modified: prefix/apis.py modified: prefix/selectors.py modified: search/apis.py modified: search/urls.py
Fixes for deployment
Changes to be committed: modified: .secrets.example modified: admin_only/bco_api.service modified: biocompute/apis.py modified: config/fixtures/test_portal.json modified: config/settings.py modified: tests/fixtures/test_data.json modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py
test_objects_drafts_publish failed. Kicking back to Hadley for more investigation
Update bco_api.conf
Changes to be committed: modified: admin_only/bco_api.conf
Changes to be committed: modified: biocompute/apis.py modified: biocompute/services.py modified: config/bco_scores.py modified: config/services.py modified: config/settings.py modified: config/urls.py modified: tests/fixtures/test_data.json renamed: tests/fixtures/example_bco.py -> tests/fixtures/testing_bcos.py modified: tests/test_apis/test_api_prefix/test_prefixes_create.py modified: tests/test_apis/test_biocompute/test_objects_drafts_modify.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py
"derrived_from": []
fix test
Add Validate url endpoint
Changes to be committed: modified: biocompute/apis.py modified: biocompute/urls.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py
Changes to be committed: modified: config/services.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Changes to be committed: modified: biocompute/apis.py
Changes to be committed: modified: biocompute/apis.py
Typo fix Changes to be committed: modified: biocompute/apis.py
Add
test_portal.json
for testingChanges to be committed: modified: config/fixtures/test_portal.json
Changes to be committed: modified: admin_only/bco_api.conf modified: config/fixtures/test_portal.json
Changes to be committed: modified: config/services.py
Changes to be committed: modified: biocompute/services.py modified: config/services.py
CustomJSONWebTokenAuthentication for GET Pub BCO Changes to be committed: modified: biocompute/apis.py
Updates to authentication.apis.py Changes to be committed: modified: authentication/apis.py modified: authentication/services.py modified: search/apis.py
Updates to biocompute.apis.py
Changes to be committed: modified: biocompute/apis.py modified: biocompute/selectors.py modified: search/apis.py modified: tests/fixtures/testing_bcos.py modified: tests/test_apis/test_biocompute/test_objects_drafts_create.py
Changes to be committed: modified: authentication/apis.py modified: authentication/services.py modified: authentication/urls.py modified: biocompute/apis.py modified: biocompute/services.py modified: config/urls.py modified: prefix/services.py modified: tests/test_apis/test_biocompute/test_objects_drafts_publish.py
Changes to be committed: modified: prefix/apis.py
print(
change publish bco rejected response
On branch docs Your branch is up to date with 'origin/docs'.